Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 MIR6724-2-201ENST00000616483 92 ntBASIC30.12■■■□□ 2.41
BRCA1P38398 MIR6724-4-201ENST00000617390 92 ntBASIC30.12■■■□□ 2.41
BRCA1P38398 MIR6724-3-201ENST00000622482 92 ntBASIC30.12■■■□□ 2.41
BRCA1P38398 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
BRCA1P38398 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
BRCA1P38398 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC30.11■■■□□ 2.41
BRCA1P38398 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC30.11■■■□□ 2.41
BRCA1P38398 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC30.11■■■□□ 2.41
BRCA1P38398 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
BRCA1P38398 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC30.1■■■□□ 2.41
BRCA1P38398 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC30.1■■■□□ 2.41
BRCA1P38398 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC30.1■■■□□ 2.41
BRCA1P38398 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
BRCA1P38398 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC30.1■■■□□ 2.41
BRCA1P38398 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
BRCA1P38398 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC30.09■■■□□ 2.41
BRCA1P38398 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC30.09■■■□□ 2.41
BRCA1P38398 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
BRCA1P38398 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC30.08■■■□□ 2.41
BRCA1P38398 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC30.08■■■□□ 2.41
BRCA1P38398 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC30.08■■■□□ 2.41
BRCA1P38398 AC120024.1-201ENST00000562672 995 ntBASIC30.08■■■□□ 2.41
BRCA1P38398 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
BRCA1P38398 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
BRCA1P38398 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC30.08■■■□□ 2.41
BRCA1P38398 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
BRCA1P38398 AC133561.4-201ENST00000566112 224 ntBASIC30.08■■■□□ 2.41
BRCA1P38398 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC30.07■■■□□ 2.4
BRCA1P38398 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC30.07■■■□□ 2.4
BRCA1P38398 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
BRCA1P38398 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
BRCA1P38398 AC005837.3-201ENST00000612163 286 ntBASIC30.06■■■□□ 2.4
BRCA1P38398 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
BRCA1P38398 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC30.06■■■□□ 2.4
BRCA1P38398 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
BRCA1P38398 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
BRCA1P38398 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC30.05■■■□□ 2.4
BRCA1P38398 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC30.05■■■□□ 2.4
BRCA1P38398 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
BRCA1P38398 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
BRCA1P38398 AC104564.3-201ENST00000582367 638 ntBASIC30.04■■■□□ 2.4
BRCA1P38398 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC30.03■■■□□ 2.4
BRCA1P38398 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC30.03■■■□□ 2.4
BRCA1P38398 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC30.03■■■□□ 2.4
BRCA1P38398 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
BRCA1P38398 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
BRCA1P38398 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC30.02■■■□□ 2.4
BRCA1P38398 KRT18P10-201ENST00000388836 1287 ntBASIC30.02■■■□□ 2.4
BRCA1P38398 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC30.02■■■□□ 2.4
BRCA1P38398 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC30.02■■■□□ 2.4
BRCA1P38398 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC30.02■■■□□ 2.4
BRCA1P38398 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC30.02■■■□□ 2.4
BRCA1P38398 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
BRCA1P38398 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
BRCA1P38398 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC30■■■□□ 2.39
BRCA1P38398 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC30■■■□□ 2.39
BRCA1P38398 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC30■■■□□ 2.39
BRCA1P38398 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC30■■■□□ 2.39
BRCA1P38398 SUDS3P1-201ENST00000505831 966 ntBASIC29.99■■■□□ 2.39
BRCA1P38398 MTDHP2-201ENST00000601468 714 ntBASIC29.99■■■□□ 2.39
BRCA1P38398 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
BRCA1P38398 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC29.99■■■□□ 2.39
BRCA1P38398 AL139393.2-201ENST00000608721 2025 ntBASIC29.99■■■□□ 2.39
BRCA1P38398 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC29.98■■■□□ 2.39
BRCA1P38398 LSM4-201ENST00000252816 986 ntTSL 2 BASIC29.98■■■□□ 2.39
BRCA1P38398 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
BRCA1P38398 EBPL-204ENST00000378272 766 ntTSL 3 BASIC29.98■■■□□ 2.39
BRCA1P38398 AC010997.5-201ENST00000609182 354 ntBASIC29.98■■■□□ 2.39
BRCA1P38398 RASSF1-AS1-201ENST00000629828 790 ntBASIC29.98■■■□□ 2.39
BRCA1P38398 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
BRCA1P38398 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC29.97■■■□□ 2.39
BRCA1P38398 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC29.97■■■□□ 2.39
BRCA1P38398 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
BRCA1P38398 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC29.97■■■□□ 2.39
BRCA1P38398 TK2-202ENST00000417693 1046 ntTSL 2 BASIC29.97■■■□□ 2.39
BRCA1P38398 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC29.97■■■□□ 2.39
BRCA1P38398 AC092666.2-201ENST00000613287 246 ntBASIC29.97■■■□□ 2.39
BRCA1P38398 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC29.96■■■□□ 2.39
BRCA1P38398 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC29.96■■■□□ 2.39
BRCA1P38398 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC29.96■■■□□ 2.39
BRCA1P38398 EXOG-217ENST00000630638 197 ntTSL 5 BASIC29.95■■■□□ 2.38
BRCA1P38398 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC29.94■■■□□ 2.38
BRCA1P38398 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC29.94■■■□□ 2.38
BRCA1P38398 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC29.94■■■□□ 2.38
BRCA1P38398 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC29.94■■■□□ 2.38
BRCA1P38398 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC29.94■■■□□ 2.38
BRCA1P38398 LGR4-203ENST00000480977 492 ntTSL 2 BASIC29.94■■■□□ 2.38
BRCA1P38398 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
BRCA1P38398 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC29.93■■■□□ 2.38
BRCA1P38398 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
BRCA1P38398 AC135279.3-201ENST00000610945 1311 ntBASIC29.93■■■□□ 2.38
BRCA1P38398 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC29.93■■■□□ 2.38
BRCA1P38398 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
BRCA1P38398 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
BRCA1P38398 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
BRCA1P38398 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
BRCA1P38398 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC29.92■■■□□ 2.38
BRCA1P38398 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC29.92■■■□□ 2.38
BRCA1P38398 AC106739.1-201ENST00000617035 715 ntBASIC29.91■■■□□ 2.38
BRCA1P38398 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC29.91■■■□□ 2.38
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms