Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
MSH4O15457 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC27.2■■□□□ 1.94
MSH4O15457 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC27.2■■□□□ 1.94
MSH4O15457 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
MSH4O15457 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC27.19■■□□□ 1.94
MSH4O15457 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
MSH4O15457 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
MSH4O15457 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC27.19■■□□□ 1.94
MSH4O15457 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC27.19■■□□□ 1.94
MSH4O15457 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
MSH4O15457 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC27.19■■□□□ 1.94
MSH4O15457 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
MSH4O15457 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC27.19■■□□□ 1.94
MSH4O15457 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC27.19■■□□□ 1.94
MSH4O15457 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC27.18■■□□□ 1.94
MSH4O15457 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC27.18■■□□□ 1.94
MSH4O15457 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC27.18■■□□□ 1.94
MSH4O15457 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC27.18■■□□□ 1.94
MSH4O15457 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
MSH4O15457 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
MSH4O15457 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
MSH4O15457 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC27.17■■□□□ 1.94
MSH4O15457 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
MSH4O15457 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC27.17■■□□□ 1.94
MSH4O15457 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC27.17■■□□□ 1.94
MSH4O15457 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC27.17■■□□□ 1.94
MSH4O15457 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC27.17■■□□□ 1.94
MSH4O15457 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC27.17■■□□□ 1.94
MSH4O15457 AC092803.2-201ENST00000564287 1899 ntBASIC27.17■■□□□ 1.94
MSH4O15457 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
MSH4O15457 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC27.16■■□□□ 1.94
MSH4O15457 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
MSH4O15457 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC27.16■■□□□ 1.94
MSH4O15457 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
MSH4O15457 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC27.16■■□□□ 1.94
MSH4O15457 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
MSH4O15457 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
MSH4O15457 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC27.15■■□□□ 1.94
MSH4O15457 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC27.15■■□□□ 1.94
MSH4O15457 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC27.15■■□□□ 1.94
MSH4O15457 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC27.15■■□□□ 1.94
MSH4O15457 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
MSH4O15457 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC27.14■■□□□ 1.94
MSH4O15457 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
MSH4O15457 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC27.14■■□□□ 1.93
MSH4O15457 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
MSH4O15457 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
MSH4O15457 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
MSH4O15457 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
MSH4O15457 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC27.13■■□□□ 1.93
MSH4O15457 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC27.13■■□□□ 1.93
MSH4O15457 RPS2P7-201ENST00000447334 885 ntBASIC27.13■■□□□ 1.93
MSH4O15457 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
MSH4O15457 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
MSH4O15457 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC27.12■■□□□ 1.93
MSH4O15457 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
MSH4O15457 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC27.12■■□□□ 1.93
MSH4O15457 AC087393.1-201ENST00000582896 145 ntBASIC27.12■■□□□ 1.93
MSH4O15457 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC27.12■■□□□ 1.93
MSH4O15457 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC27.12■■□□□ 1.93
MSH4O15457 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC27.11■■□□□ 1.93
MSH4O15457 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
MSH4O15457 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC27.11■■□□□ 1.93
MSH4O15457 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC27.11■■□□□ 1.93
MSH4O15457 AC096887.2-201ENST00000623443 1957 ntBASIC27.1■■□□□ 1.93
MSH4O15457 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC27.1■■□□□ 1.93
MSH4O15457 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
MSH4O15457 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
MSH4O15457 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC27.1■■□□□ 1.93
MSH4O15457 AC091060.1-201ENST00000623524 1766 ntBASIC27.09■■□□□ 1.93
MSH4O15457 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC27.09■■□□□ 1.93
MSH4O15457 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC27.09■■□□□ 1.93
MSH4O15457 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
MSH4O15457 AC139795.1-202ENST00000500444 432 ntBASIC27.09■■□□□ 1.93
MSH4O15457 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC27.09■■□□□ 1.93
MSH4O15457 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC27.09■■□□□ 1.93
MSH4O15457 AC010501.1-201ENST00000606270 1962 ntBASIC27.09■■□□□ 1.93
MSH4O15457 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC27.08■■□□□ 1.93
MSH4O15457 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC27.08■■□□□ 1.93
MSH4O15457 BHLHE23-202ENST00000612929 1109 ntBASIC27.08■■□□□ 1.93
MSH4O15457 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC27.08■■□□□ 1.93
MSH4O15457 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC27.08■■□□□ 1.93
MSH4O15457 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC27.08■■□□□ 1.93
MSH4O15457 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC27.08■■□□□ 1.93
MSH4O15457 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
MSH4O15457 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
MSH4O15457 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
MSH4O15457 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
MSH4O15457 HYI-210ENST00000486909 905 ntTSL 5 BASIC27.07■■□□□ 1.92
MSH4O15457 AC010980.1-201ENST00000587192 1142 ntBASIC27.07■■□□□ 1.92
MSH4O15457 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC27.07■■□□□ 1.92
MSH4O15457 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
MSH4O15457 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC27.06■■□□□ 1.92
MSH4O15457 KRT18P10-201ENST00000388836 1287 ntBASIC27.06■■□□□ 1.92
MSH4O15457 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC27.06■■□□□ 1.92
MSH4O15457 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
MSH4O15457 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC27.06■■□□□ 1.92
MSH4O15457 SNAI3-AS1-204ENST00000567997 2048 ntBASIC27.06■■□□□ 1.92
MSH4O15457 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC27.05■■□□□ 1.92
MSH4O15457 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC27.05■■□□□ 1.92
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms