Protein–RNA interactions for Protein: A0A0B4J271

TRAV12-3, T-cell receptor alpha variable 12-3 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV12-3A0A0B4J271 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV12-3A0A0B4J271 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV12-3A0A0B4J271 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV12-3A0A0B4J271 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV12-3A0A0B4J271 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV12-3A0A0B4J271 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV12-3A0A0B4J271 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV12-3A0A0B4J271 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV12-3A0A0B4J271 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV12-3A0A0B4J271 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV12-3A0A0B4J271 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
TRAV12-3A0A0B4J271 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV12-3A0A0B4J271 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV12-3A0A0B4J271 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV12-3A0A0B4J271 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV12-3A0A0B4J271 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
TRAV12-3A0A0B4J271 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC17.75■□□□□ 0.43
TRAV12-3A0A0B4J271 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC17.75■□□□□ 0.43
TRAV12-3A0A0B4J271 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
TRAV12-3A0A0B4J271 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV12-3A0A0B4J271 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV12-3A0A0B4J271 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV12-3A0A0B4J271 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV12-3A0A0B4J271 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV12-3A0A0B4J271 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV12-3A0A0B4J271 AC096887.2-201ENST00000623443 1957 ntBASIC17.74■□□□□ 0.43
TRAV12-3A0A0B4J271 TPT1-202ENST00000379055 948 ntTSL 2 BASIC17.74■□□□□ 0.43
TRAV12-3A0A0B4J271 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
TRAV12-3A0A0B4J271 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV12-3A0A0B4J271 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV12-3A0A0B4J271 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV12-3A0A0B4J271 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV12-3A0A0B4J271 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
TRAV12-3A0A0B4J271 MIR639-201ENST00000384974 98 ntBASIC17.73■□□□□ 0.43
TRAV12-3A0A0B4J271 RPS2-202ENST00000526522 924 ntTSL 2 BASIC17.73■□□□□ 0.43
TRAV12-3A0A0B4J271 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC17.73■□□□□ 0.43
TRAV12-3A0A0B4J271 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV12-3A0A0B4J271 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC17.73■□□□□ 0.43
TRAV12-3A0A0B4J271 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV12-3A0A0B4J271 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
TRAV12-3A0A0B4J271 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV12-3A0A0B4J271 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV12-3A0A0B4J271 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV12-3A0A0B4J271 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC17.72■□□□□ 0.43
TRAV12-3A0A0B4J271 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC17.72■□□□□ 0.43
TRAV12-3A0A0B4J271 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
TRAV12-3A0A0B4J271 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV12-3A0A0B4J271 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
TRAV12-3A0A0B4J271 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC17.72■□□□□ 0.43
TRAV12-3A0A0B4J271 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV12-3A0A0B4J271 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV12-3A0A0B4J271 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV12-3A0A0B4J271 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV12-3A0A0B4J271 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC17.71■□□□□ 0.43
TRAV12-3A0A0B4J271 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV12-3A0A0B4J271 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC17.71■□□□□ 0.43
TRAV12-3A0A0B4J271 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
TRAV12-3A0A0B4J271 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.42
TRAV12-3A0A0B4J271 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV12-3A0A0B4J271 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV12-3A0A0B4J271 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV12-3A0A0B4J271 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV12-3A0A0B4J271 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC17.7■□□□□ 0.42
TRAV12-3A0A0B4J271 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV12-3A0A0B4J271 AC060814.1-201ENST00000554326 538 ntBASIC17.7■□□□□ 0.42
TRAV12-3A0A0B4J271 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV12-3A0A0B4J271 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC17.7■□□□□ 0.42
TRAV12-3A0A0B4J271 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV12-3A0A0B4J271 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV12-3A0A0B4J271 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV12-3A0A0B4J271 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
TRAV12-3A0A0B4J271 AL157400.5-201ENST00000507624 621 ntBASIC17.69■□□□□ 0.42
TRAV12-3A0A0B4J271 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAV12-3A0A0B4J271 MOB2-207ENST00000614710 705 ntTSL 5 BASIC17.69■□□□□ 0.42
TRAV12-3A0A0B4J271 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV12-3A0A0B4J271 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV12-3A0A0B4J271 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV12-3A0A0B4J271 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAV12-3A0A0B4J271 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAV12-3A0A0B4J271 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV12-3A0A0B4J271 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV12-3A0A0B4J271 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC17.68■□□□□ 0.42
TRAV12-3A0A0B4J271 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV12-3A0A0B4J271 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC17.68■□□□□ 0.42
TRAV12-3A0A0B4J271 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV12-3A0A0B4J271 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV12-3A0A0B4J271 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV12-3A0A0B4J271 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV12-3A0A0B4J271 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV12-3A0A0B4J271 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV12-3A0A0B4J271 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
TRAV12-3A0A0B4J271 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV12-3A0A0B4J271 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV12-3A0A0B4J271 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC17.67■□□□□ 0.42
TRAV12-3A0A0B4J271 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV12-3A0A0B4J271 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV12-3A0A0B4J271 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC17.67■□□□□ 0.42
TRAV12-3A0A0B4J271 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV12-3A0A0B4J271 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV12-3A0A0B4J271 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms