Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.07■□□□□ 0.8
TRAV39A0A0B4J263 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRAV39A0A0B4J263 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
TRAV39A0A0B4J263 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRAV39A0A0B4J263 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRAV39A0A0B4J263 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC20.06■□□□□ 0.8
TRAV39A0A0B4J263 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC20.06■□□□□ 0.8
TRAV39A0A0B4J263 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC20.06■□□□□ 0.8
TRAV39A0A0B4J263 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC20.06■□□□□ 0.8
TRAV39A0A0B4J263 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRAV39A0A0B4J263 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC20.06■□□□□ 0.8
TRAV39A0A0B4J263 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC20.05■□□□□ 0.8
TRAV39A0A0B4J263 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV39A0A0B4J263 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
TRAV39A0A0B4J263 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
TRAV39A0A0B4J263 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC20.05■□□□□ 0.8
TRAV39A0A0B4J263 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV39A0A0B4J263 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
TRAV39A0A0B4J263 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC20.05■□□□□ 0.8
TRAV39A0A0B4J263 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV39A0A0B4J263 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV39A0A0B4J263 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV39A0A0B4J263 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRAV39A0A0B4J263 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.04■□□□□ 0.8
TRAV39A0A0B4J263 CEP120-209ENST00000515110 606 ntTSL 3 BASIC20.04■□□□□ 0.8
TRAV39A0A0B4J263 AC022413.1-201ENST00000624602 984 ntBASIC20.04■□□□□ 0.8
TRAV39A0A0B4J263 SRP68-213ENST00000629930 165 ntTSL 5 BASIC20.04■□□□□ 0.8
TRAV39A0A0B4J263 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRAV39A0A0B4J263 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
TRAV39A0A0B4J263 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRAV39A0A0B4J263 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
TRAV39A0A0B4J263 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC20.03■□□□□ 0.8
TRAV39A0A0B4J263 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC20.03■□□□□ 0.8
TRAV39A0A0B4J263 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRAV39A0A0B4J263 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRAV39A0A0B4J263 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC20.03■□□□□ 0.8
TRAV39A0A0B4J263 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.02■□□□□ 0.8
TRAV39A0A0B4J263 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TRAV39A0A0B4J263 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRAV39A0A0B4J263 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC20.01■□□□□ 0.79
TRAV39A0A0B4J263 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC20.01■□□□□ 0.79
TRAV39A0A0B4J263 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRAV39A0A0B4J263 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
TRAV39A0A0B4J263 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TRAV39A0A0B4J263 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRAV39A0A0B4J263 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TRAV39A0A0B4J263 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC20.01■□□□□ 0.79
TRAV39A0A0B4J263 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TRAV39A0A0B4J263 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC20■□□□□ 0.79
TRAV39A0A0B4J263 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
TRAV39A0A0B4J263 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
TRAV39A0A0B4J263 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC20■□□□□ 0.79
TRAV39A0A0B4J263 AC025884.2-201ENST00000553429 711 ntBASIC20■□□□□ 0.79
TRAV39A0A0B4J263 AC092296.2-201ENST00000589470 999 ntBASIC20■□□□□ 0.79
TRAV39A0A0B4J263 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TRAV39A0A0B4J263 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC20■□□□□ 0.79
TRAV39A0A0B4J263 SMPD5-203ENST00000639008 1464 ntBASIC19.99■□□□□ 0.79
TRAV39A0A0B4J263 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
TRAV39A0A0B4J263 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRAV39A0A0B4J263 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
TRAV39A0A0B4J263 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC19.99■□□□□ 0.79
TRAV39A0A0B4J263 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRAV39A0A0B4J263 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
TRAV39A0A0B4J263 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
TRAV39A0A0B4J263 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
TRAV39A0A0B4J263 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC19.98■□□□□ 0.79
TRAV39A0A0B4J263 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRAV39A0A0B4J263 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRAV39A0A0B4J263 AC022211.4-201ENST00000625094 2161 ntBASIC19.97■□□□□ 0.79
TRAV39A0A0B4J263 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC19.97■□□□□ 0.79
TRAV39A0A0B4J263 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC19.97■□□□□ 0.79
TRAV39A0A0B4J263 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC19.97■□□□□ 0.79
TRAV39A0A0B4J263 PFN2-211ENST00000489155 636 ntTSL 4 BASIC19.97■□□□□ 0.79
TRAV39A0A0B4J263 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
TRAV39A0A0B4J263 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV39A0A0B4J263 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV39A0A0B4J263 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV39A0A0B4J263 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV39A0A0B4J263 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
TRAV39A0A0B4J263 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV39A0A0B4J263 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC19.97■□□□□ 0.79
TRAV39A0A0B4J263 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC19.96■□□□□ 0.79
TRAV39A0A0B4J263 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TRAV39A0A0B4J263 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRAV39A0A0B4J263 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
TRAV39A0A0B4J263 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TRAV39A0A0B4J263 MIR4449-201ENST00000578365 66 ntBASIC19.96■□□□□ 0.79
TRAV39A0A0B4J263 MED17-227ENST00000640521 2047 ntTSL 5 BASIC19.96■□□□□ 0.79
TRAV39A0A0B4J263 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC19.96■□□□□ 0.79
TRAV39A0A0B4J263 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRAV39A0A0B4J263 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV39A0A0B4J263 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV39A0A0B4J263 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC19.95■□□□□ 0.78
TRAV39A0A0B4J263 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV39A0A0B4J263 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV39A0A0B4J263 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC19.95■□□□□ 0.78
TRAV39A0A0B4J263 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV39A0A0B4J263 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRAV39A0A0B4J263 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRAV39A0A0B4J263 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms