Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 AC004817.3-201ENST00000602957 2129 ntBASIC17.54■□□□□ 0.4
PCDH9Q9HC56 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 AC004870.1-201ENST00000315132 882 ntBASIC17.54■□□□□ 0.4
PCDH9Q9HC56 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 SCARNA2-201ENST00000458748 420 ntBASIC17.54■□□□□ 0.4
PCDH9Q9HC56 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH9Q9HC56 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.53■□□□□ 0.4
PCDH9Q9HC56 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
PCDH9Q9HC56 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDH9Q9HC56 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDH9Q9HC56 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
PCDH9Q9HC56 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PCDH9Q9HC56 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.53■□□□□ 0.4
PCDH9Q9HC56 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
PCDH9Q9HC56 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDH9Q9HC56 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
PCDH9Q9HC56 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDH9Q9HC56 AL391256.1-201ENST00000443260 1855 ntBASIC17.53■□□□□ 0.4
PCDH9Q9HC56 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDH9Q9HC56 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDH9Q9HC56 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDH9Q9HC56 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.53■□□□□ 0.4
PCDH9Q9HC56 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.53■□□□□ 0.4
PCDH9Q9HC56 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.53■□□□□ 0.4
PCDH9Q9HC56 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDH9Q9HC56 SART3-203ENST00000546611 1184 ntBASIC17.53■□□□□ 0.4
PCDH9Q9HC56 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDH9Q9HC56 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.53■□□□□ 0.4
PCDH9Q9HC56 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDH9Q9HC56 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PCDH9Q9HC56 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDH9Q9HC56 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
PCDH9Q9HC56 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDH9Q9HC56 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDH9Q9HC56 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PCDH9Q9HC56 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PCDH9Q9HC56 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.52■□□□□ 0.4
PCDH9Q9HC56 CES3-203ENST00000543856 3178 ntTSL 2 BASIC17.52■□□□□ 0.4
PCDH9Q9HC56 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
PCDH9Q9HC56 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.52■□□□□ 0.4
PCDH9Q9HC56 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC17.52■□□□□ 0.4
PCDH9Q9HC56 CYP2T1P-202ENST00000641596 2535 ntBASIC17.52■□□□□ 0.4
PCDH9Q9HC56 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.52■□□□□ 0.4
PCDH9Q9HC56 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
PCDH9Q9HC56 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
PCDH9Q9HC56 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17.52■□□□□ 0.4
PCDH9Q9HC56 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC17.52■□□□□ 0.4
PCDH9Q9HC56 PRYP5-201ENST00000451909 266 ntBASIC17.52■□□□□ 0.4
PCDH9Q9HC56 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
PCDH9Q9HC56 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PCDH9Q9HC56 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
PCDH9Q9HC56 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PCDH9Q9HC56 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC17.52■□□□□ 0.4
PCDH9Q9HC56 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.52■□□□□ 0.4
PCDH9Q9HC56 AL121912.1-201ENST00000603683 238 ntBASIC17.52■□□□□ 0.4
PCDH9Q9HC56 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
PCDH9Q9HC56 AL022326.1-202ENST00000641533 845 ntBASIC17.52■□□□□ 0.4
PCDH9Q9HC56 PCDH8P1-201ENST00000428983 2773 ntBASIC17.52■□□□□ 0.4
PCDH9Q9HC56 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
PCDH9Q9HC56 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PCDH9Q9HC56 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PCDH9Q9HC56 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PCDH9Q9HC56 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PCDH9Q9HC56 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PCDH9Q9HC56 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
PCDH9Q9HC56 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PCDH9Q9HC56 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms