Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 FHL2-212ENST00000607522 759 ntTSL 2 BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 GNE-204ENST00000539208 2190 ntTSL 2 BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 AC087289.5-201ENST00000586076 3175 ntBASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC21.59■■□□□ 1.05
SHANK3Q9BYB0 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
SHANK3Q9BYB0 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHANK3Q9BYB0 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
SHANK3Q9BYB0 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC21.59■■□□□ 1.05
SHANK3Q9BYB0 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SHANK3Q9BYB0 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHANK3Q9BYB0 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
SHANK3Q9BYB0 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC21.59■■□□□ 1.05
SHANK3Q9BYB0 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SHANK3Q9BYB0 RAB35-202ENST00000534951 939 ntTSL 2 BASIC21.59■■□□□ 1.05
SHANK3Q9BYB0 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
SHANK3Q9BYB0 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
SHANK3Q9BYB0 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHANK3Q9BYB0 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHANK3Q9BYB0 TUBB8P12-201ENST00000308911 1335 ntBASIC21.59■■□□□ 1.05
SHANK3Q9BYB0 TUBB7P-202ENST00000428444 1305 ntBASIC21.59■■□□□ 1.05
SHANK3Q9BYB0 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC21.59■■□□□ 1.05
SHANK3Q9BYB0 TUBB8P7-204ENST00000567960 1332 ntBASIC21.59■■□□□ 1.05
SHANK3Q9BYB0 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHANK3Q9BYB0 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SHANK3Q9BYB0 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC21.58■■□□□ 1.05
SHANK3Q9BYB0 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SHANK3Q9BYB0 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
SHANK3Q9BYB0 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SHANK3Q9BYB0 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SHANK3Q9BYB0 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
SHANK3Q9BYB0 GNAQP1-201ENST00000444815 1067 ntBASIC21.58■■□□□ 1.05
SHANK3Q9BYB0 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC21.58■■□□□ 1.05
SHANK3Q9BYB0 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC21.58■■□□□ 1.05
SHANK3Q9BYB0 AC044860.1-202ENST00000559481 777 ntBASIC21.58■■□□□ 1.05
SHANK3Q9BYB0 RPS15-212ENST00000593052 629 ntTSL 2 BASIC21.58■■□□□ 1.05
SHANK3Q9BYB0 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC21.58■■□□□ 1.05
SHANK3Q9BYB0 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
SHANK3Q9BYB0 AC017083.2-201ENST00000608069 979 ntBASIC21.58■■□□□ 1.05
SHANK3Q9BYB0 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC21.58■■□□□ 1.05
SHANK3Q9BYB0 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC21.58■■□□□ 1.05
SHANK3Q9BYB0 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC21.58■■□□□ 1.05
SHANK3Q9BYB0 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
SHANK3Q9BYB0 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SHANK3Q9BYB0 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
SHANK3Q9BYB0 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC21.58■■□□□ 1.04
SHANK3Q9BYB0 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SHANK3Q9BYB0 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC21.58■■□□□ 1.04
SHANK3Q9BYB0 KRT8P12-202ENST00000472924 1397 ntBASIC21.58■■□□□ 1.04
SHANK3Q9BYB0 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SHANK3Q9BYB0 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SHANK3Q9BYB0 RN7SL618P-201ENST00000477850 296 ntBASIC21.58■■□□□ 1.04
SHANK3Q9BYB0 PARP8-206ENST00000503665 572 ntTSL 4 BASIC21.58■■□□□ 1.04
SHANK3Q9BYB0 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC21.58■■□□□ 1.04
SHANK3Q9BYB0 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC21.58■■□□□ 1.04
SHANK3Q9BYB0 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC21.58■■□□□ 1.04
SHANK3Q9BYB0 AC055876.2-201ENST00000531834 546 ntBASIC21.58■■□□□ 1.04
SHANK3Q9BYB0 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SHANK3Q9BYB0 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
SHANK3Q9BYB0 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC21.57■■□□□ 1.04
SHANK3Q9BYB0 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
SHANK3Q9BYB0 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SHANK3Q9BYB0 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SHANK3Q9BYB0 SPDYE19P-201ENST00000338590 713 ntBASIC21.57■■□□□ 1.04
SHANK3Q9BYB0 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC21.57■■□□□ 1.04
SHANK3Q9BYB0 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC21.57■■□□□ 1.04
SHANK3Q9BYB0 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC21.57■■□□□ 1.04
SHANK3Q9BYB0 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC21.57■■□□□ 1.04
SHANK3Q9BYB0 AC114501.2-201ENST00000439631 535 ntBASIC21.57■■□□□ 1.04
SHANK3Q9BYB0 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC21.57■■□□□ 1.04
SHANK3Q9BYB0 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
SHANK3Q9BYB0 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC21.57■■□□□ 1.04
SHANK3Q9BYB0 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC21.57■■□□□ 1.04
SHANK3Q9BYB0 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC21.57■■□□□ 1.04
SHANK3Q9BYB0 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC21.57■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms