Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC129492.6-201ENST00000611383 1305 ntBASIC19.83■□□□□ 0.77
NUP88Q99567 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
NUP88Q99567 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
NUP88Q99567 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC19.83■□□□□ 0.77
NUP88Q99567 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
NUP88Q99567 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
NUP88Q99567 AC254562.1-201ENST00000417586 456 ntBASIC19.83■□□□□ 0.77
NUP88Q99567 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.77
NUP88Q99567 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
NUP88Q99567 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC19.83■□□□□ 0.77
NUP88Q99567 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
NUP88Q99567 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.77
NUP88Q99567 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
NUP88Q99567 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC19.83■□□□□ 0.76
NUP88Q99567 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
NUP88Q99567 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
NUP88Q99567 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC19.83■□□□□ 0.76
NUP88Q99567 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.83■□□□□ 0.76
NUP88Q99567 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC19.83■□□□□ 0.76
NUP88Q99567 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
NUP88Q99567 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NUP88Q99567 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
NUP88Q99567 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
NUP88Q99567 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
NUP88Q99567 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC19.82■□□□□ 0.76
NUP88Q99567 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
NUP88Q99567 PP12613-201ENST00000424958 2230 ntBASIC19.82■□□□□ 0.76
NUP88Q99567 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
NUP88Q99567 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC19.82■□□□□ 0.76
NUP88Q99567 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NUP88Q99567 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
NUP88Q99567 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
NUP88Q99567 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NUP88Q99567 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NUP88Q99567 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
NUP88Q99567 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NUP88Q99567 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
NUP88Q99567 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC19.82■□□□□ 0.76
NUP88Q99567 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC19.82■□□□□ 0.76
NUP88Q99567 FALEC-201ENST00000416894 566 ntTSL 3 BASIC19.82■□□□□ 0.76
NUP88Q99567 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC19.82■□□□□ 0.76
NUP88Q99567 RPL28-209ENST00000560055 670 ntTSL 3 BASIC19.82■□□□□ 0.76
NUP88Q99567 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
NUP88Q99567 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
NUP88Q99567 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC19.82■□□□□ 0.76
NUP88Q99567 AC027612.4-201ENST00000605371 583 ntBASIC19.82■□□□□ 0.76
NUP88Q99567 CITED2-204ENST00000618718 901 ntTSL 2 BASIC19.82■□□□□ 0.76
NUP88Q99567 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
NUP88Q99567 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
NUP88Q99567 HARS-203ENST00000431330 1774 ntTSL 2 BASIC19.82■□□□□ 0.76
NUP88Q99567 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC19.82■□□□□ 0.76
NUP88Q99567 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC19.82■□□□□ 0.76
NUP88Q99567 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC19.82■□□□□ 0.76
NUP88Q99567 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC19.82■□□□□ 0.76
NUP88Q99567 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NUP88Q99567 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NUP88Q99567 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
NUP88Q99567 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NUP88Q99567 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC19.81■□□□□ 0.76
NUP88Q99567 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC19.81■□□□□ 0.76
NUP88Q99567 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
NUP88Q99567 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
NUP88Q99567 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NUP88Q99567 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NUP88Q99567 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NUP88Q99567 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NUP88Q99567 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NUP88Q99567 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NUP88Q99567 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NUP88Q99567 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NUP88Q99567 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
NUP88Q99567 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
NUP88Q99567 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC19.81■□□□□ 0.76
NUP88Q99567 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC19.81■□□□□ 0.76
NUP88Q99567 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC19.81■□□□□ 0.76
NUP88Q99567 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC19.81■□□□□ 0.76
NUP88Q99567 REXO1L3P-201ENST00000622202 1288 ntBASIC19.81■□□□□ 0.76
NUP88Q99567 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
NUP88Q99567 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
NUP88Q99567 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
NUP88Q99567 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC19.81■□□□□ 0.76
NUP88Q99567 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
NUP88Q99567 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
NUP88Q99567 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NUP88Q99567 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
NUP88Q99567 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
NUP88Q99567 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC19.81■□□□□ 0.76
NUP88Q99567 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NUP88Q99567 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NUP88Q99567 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
NUP88Q99567 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NUP88Q99567 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NUP88Q99567 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NUP88Q99567 BOC-212ENST00000485230 2173 ntTSL 2 BASIC19.8■□□□□ 0.76
NUP88Q99567 AC108860.2-201ENST00000562760 2183 ntBASIC19.8■□□□□ 0.76
NUP88Q99567 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NUP88Q99567 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC19.8■□□□□ 0.76
NUP88Q99567 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NUP88Q99567 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NUP88Q99567 NEK7-201ENST00000367383 586 ntTSL 2 BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms