Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS35Q96QK1 AC027601.4-201ENST00000611259 610 ntBASIC16.85■□□□□ 0.29
VPS35Q96QK1 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.85■□□□□ 0.29
VPS35Q96QK1 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS35Q96QK1 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS35Q96QK1 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS35Q96QK1 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS35Q96QK1 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS35Q96QK1 AL021920.2-201ENST00000624828 1351 ntBASIC16.85■□□□□ 0.29
VPS35Q96QK1 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS35Q96QK1 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS35Q96QK1 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS35Q96QK1 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.85■□□□□ 0.29
VPS35Q96QK1 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS35Q96QK1 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.85■□□□□ 0.29
VPS35Q96QK1 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.84■□□□□ 0.29
VPS35Q96QK1 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC16.84■□□□□ 0.29
VPS35Q96QK1 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS35Q96QK1 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS35Q96QK1 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS35Q96QK1 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
VPS35Q96QK1 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS35Q96QK1 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS35Q96QK1 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS35Q96QK1 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS35Q96QK1 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS35Q96QK1 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
VPS35Q96QK1 MIR574-201ENST00000385209 96 ntBASIC16.84■□□□□ 0.29
VPS35Q96QK1 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC16.84■□□□□ 0.29
VPS35Q96QK1 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
VPS35Q96QK1 PMS2P1-201ENST00000431037 1228 ntBASIC16.84■□□□□ 0.29
VPS35Q96QK1 AP000347.1-202ENST00000435868 847 ntBASIC16.84■□□□□ 0.29
VPS35Q96QK1 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS35Q96QK1 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
VPS35Q96QK1 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS35Q96QK1 KRT18P58-201ENST00000527480 1120 ntBASIC16.84■□□□□ 0.29
VPS35Q96QK1 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC16.84■□□□□ 0.29
VPS35Q96QK1 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC16.84■□□□□ 0.29
VPS35Q96QK1 AC140113.2-201ENST00000604370 208 ntBASIC16.84■□□□□ 0.29
VPS35Q96QK1 AC064836.3-201ENST00000607928 673 ntBASIC16.84■□□□□ 0.29
VPS35Q96QK1 TUBB8P12-201ENST00000308911 1335 ntBASIC16.84■□□□□ 0.29
VPS35Q96QK1 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS35Q96QK1 TUBB7P-202ENST00000428444 1305 ntBASIC16.84■□□□□ 0.29
VPS35Q96QK1 TUBB8P7-204ENST00000567960 1332 ntBASIC16.84■□□□□ 0.29
VPS35Q96QK1 TOP3BP1-201ENST00000420768 1380 ntBASIC16.84■□□□□ 0.29
VPS35Q96QK1 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC16.84■□□□□ 0.29
VPS35Q96QK1 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS35Q96QK1 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS35Q96QK1 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS35Q96QK1 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.84■□□□□ 0.29
VPS35Q96QK1 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS35Q96QK1 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS35Q96QK1 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
VPS35Q96QK1 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
VPS35Q96QK1 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS35Q96QK1 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS35Q96QK1 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
VPS35Q96QK1 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.29
VPS35Q96QK1 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
VPS35Q96QK1 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.29
VPS35Q96QK1 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
VPS35Q96QK1 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
VPS35Q96QK1 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS35Q96QK1 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS35Q96QK1 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VPS35Q96QK1 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VPS35Q96QK1 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC16.83■□□□□ 0.28
VPS35Q96QK1 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC16.83■□□□□ 0.28
VPS35Q96QK1 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VPS35Q96QK1 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS35Q96QK1 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS35Q96QK1 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS35Q96QK1 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
VPS35Q96QK1 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
VPS35Q96QK1 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
VPS35Q96QK1 IGLL3P-201ENST00000412472 434 ntBASIC16.83■□□□□ 0.28
VPS35Q96QK1 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS35Q96QK1 MED15P5-201ENST00000423150 992 ntBASIC16.83■□□□□ 0.28
VPS35Q96QK1 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
VPS35Q96QK1 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.83■□□□□ 0.28
VPS35Q96QK1 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS35Q96QK1 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
VPS35Q96QK1 HS6ST1P1-201ENST00000481504 1234 ntBASIC16.83■□□□□ 0.28
VPS35Q96QK1 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
VPS35Q96QK1 POLD4-207ENST00000531239 584 ntTSL 2 BASIC16.83■□□□□ 0.28
VPS35Q96QK1 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC16.83■□□□□ 0.28
VPS35Q96QK1 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.83■□□□□ 0.28
VPS35Q96QK1 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
VPS35Q96QK1 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS35Q96QK1 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.83■□□□□ 0.28
VPS35Q96QK1 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS35Q96QK1 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VPS35Q96QK1 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS35Q96QK1 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.82■□□□□ 0.28
VPS35Q96QK1 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS35Q96QK1 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.82■□□□□ 0.28
VPS35Q96QK1 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS35Q96QK1 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS35Q96QK1 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.82■□□□□ 0.28
VPS35Q96QK1 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms