Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 AC123567.1-201ENST00000548294 1261 ntBASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC19.95■□□□□ 0.78
SMC1BQ8NDV3 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SMC1BQ8NDV3 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC19.95■□□□□ 0.78
SMC1BQ8NDV3 AC005332.7-201ENST00000614046 2005 ntBASIC19.95■□□□□ 0.78
SMC1BQ8NDV3 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SMC1BQ8NDV3 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SMC1BQ8NDV3 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SMC1BQ8NDV3 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SMC1BQ8NDV3 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SMC1BQ8NDV3 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SMC1BQ8NDV3 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SMC1BQ8NDV3 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
SMC1BQ8NDV3 AL080243.2-201ENST00000418783 582 ntBASIC19.95■□□□□ 0.78
SMC1BQ8NDV3 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SMC1BQ8NDV3 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC19.95■□□□□ 0.78
SMC1BQ8NDV3 MIR3615-201ENST00000581999 87 ntBASIC19.95■□□□□ 0.78
SMC1BQ8NDV3 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC19.95■□□□□ 0.78
SMC1BQ8NDV3 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC19.95■□□□□ 0.78
SMC1BQ8NDV3 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC19.95■□□□□ 0.78
SMC1BQ8NDV3 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
SMC1BQ8NDV3 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SMC1BQ8NDV3 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC19.95■□□□□ 0.78
SMC1BQ8NDV3 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC19.95■□□□□ 0.78
SMC1BQ8NDV3 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SMC1BQ8NDV3 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SMC1BQ8NDV3 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC19.94■□□□□ 0.78
SMC1BQ8NDV3 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMC1BQ8NDV3 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
SMC1BQ8NDV3 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
SMC1BQ8NDV3 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
SMC1BQ8NDV3 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMC1BQ8NDV3 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC19.94■□□□□ 0.78
SMC1BQ8NDV3 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC19.94■□□□□ 0.78
SMC1BQ8NDV3 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC19.94■□□□□ 0.78
SMC1BQ8NDV3 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC19.94■□□□□ 0.78
SMC1BQ8NDV3 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMC1BQ8NDV3 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC19.94■□□□□ 0.78
SMC1BQ8NDV3 AC108725.1-201ENST00000495472 409 ntBASIC19.94■□□□□ 0.78
SMC1BQ8NDV3 SPDYE18-201ENST00000510091 1050 ntBASIC19.94■□□□□ 0.78
SMC1BQ8NDV3 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC19.94■□□□□ 0.78
SMC1BQ8NDV3 WNT11-204ENST00000621122 789 ntTSL 5 BASIC19.94■□□□□ 0.78
SMC1BQ8NDV3 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMC1BQ8NDV3 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMC1BQ8NDV3 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
SMC1BQ8NDV3 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMC1BQ8NDV3 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.94■□□□□ 0.78
SMC1BQ8NDV3 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMC1BQ8NDV3 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMC1BQ8NDV3 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SMC1BQ8NDV3 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 AMT-250ENST00000637682 1823 ntTSL 5 BASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 TPRX2P-201ENST00000535362 881 ntBASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 FOS-206ENST00000555347 1280 ntTSL 2 BASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 AL079307.3-201ENST00000556114 283 ntBASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 WT1-AS_2.1-201ENST00000613208 137 ntBASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 TNXA-203ENST00000507684 2038 ntBASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMC1BQ8NDV3 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms