Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
PPP4R4Q6NUP7 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
PPP4R4Q6NUP7 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
PPP4R4Q6NUP7 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 MIR662-201ENST00000384847 95 ntBASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 SLC25A1P3-201ENST00000395415 828 ntBASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 AC005104.2-201ENST00000427818 678 ntBASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 HCG4P8-203ENST00000443049 980 ntBASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 AL662844.4-201ENST00000606367 2838 ntBASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
PPP4R4Q6NUP7 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 AC068587.6-202ENST00000641839 5619 ntBASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 TEN1-204ENST00000588202 862 ntTSL 3 BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 GPR32P1-201ENST00000601788 811 ntBASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PPP4R4Q6NUP7 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PPP4R4Q6NUP7 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms