Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
KRT39Q6A163 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
KRT39Q6A163 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
KRT39Q6A163 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
KRT39Q6A163 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC18.32■□□□□ 0.52
KRT39Q6A163 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
KRT39Q6A163 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
KRT39Q6A163 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC18.32■□□□□ 0.52
KRT39Q6A163 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
KRT39Q6A163 LINC00895-201ENST00000629028 1637 ntBASIC18.32■□□□□ 0.52
KRT39Q6A163 OR6D1P-203ENST00000641209 4860 ntBASIC18.32■□□□□ 0.52
KRT39Q6A163 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
KRT39Q6A163 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC18.32■□□□□ 0.52
KRT39Q6A163 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC18.32■□□□□ 0.52
KRT39Q6A163 PENK-208ENST00000523051 772 ntTSL 5 BASIC18.32■□□□□ 0.52
KRT39Q6A163 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
KRT39Q6A163 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC18.32■□□□□ 0.52
KRT39Q6A163 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
KRT39Q6A163 AL121894.2-201ENST00000602977 491 ntBASIC18.32■□□□□ 0.52
KRT39Q6A163 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC18.32■□□□□ 0.52
KRT39Q6A163 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC18.32■□□□□ 0.52
KRT39Q6A163 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
KRT39Q6A163 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC18.32■□□□□ 0.52
KRT39Q6A163 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.32■□□□□ 0.52
KRT39Q6A163 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC18.32■□□□□ 0.52
KRT39Q6A163 FLJ38576-201ENST00000623820 2459 ntBASIC18.32■□□□□ 0.52
KRT39Q6A163 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
KRT39Q6A163 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
KRT39Q6A163 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
KRT39Q6A163 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC18.32■□□□□ 0.52
KRT39Q6A163 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
KRT39Q6A163 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
KRT39Q6A163 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC18.32■□□□□ 0.52
KRT39Q6A163 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
KRT39Q6A163 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
KRT39Q6A163 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC18.31■□□□□ 0.52
KRT39Q6A163 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
KRT39Q6A163 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC18.31■□□□□ 0.52
KRT39Q6A163 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
KRT39Q6A163 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
KRT39Q6A163 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
KRT39Q6A163 AL391256.1-201ENST00000443260 1855 ntBASIC18.31■□□□□ 0.52
KRT39Q6A163 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
KRT39Q6A163 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
KRT39Q6A163 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
KRT39Q6A163 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
KRT39Q6A163 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.31■□□□□ 0.52
KRT39Q6A163 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
KRT39Q6A163 AC098831.1-202ENST00000438821 336 ntBASIC18.31■□□□□ 0.52
KRT39Q6A163 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC18.31■□□□□ 0.52
KRT39Q6A163 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.31■□□□□ 0.52
KRT39Q6A163 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.31■□□□□ 0.52
KRT39Q6A163 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
KRT39Q6A163 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC18.31■□□□□ 0.52
KRT39Q6A163 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
KRT39Q6A163 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC18.31■□□□□ 0.52
KRT39Q6A163 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
KRT39Q6A163 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
KRT39Q6A163 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
KRT39Q6A163 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
KRT39Q6A163 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
KRT39Q6A163 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
KRT39Q6A163 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
KRT39Q6A163 OS9-205ENST00000413095 1660 ntTSL 2 BASIC18.31■□□□□ 0.52
KRT39Q6A163 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
KRT39Q6A163 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.31■□□□□ 0.52
KRT39Q6A163 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
KRT39Q6A163 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
KRT39Q6A163 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
KRT39Q6A163 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.3■□□□□ 0.52
KRT39Q6A163 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
KRT39Q6A163 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
KRT39Q6A163 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
KRT39Q6A163 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
KRT39Q6A163 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
KRT39Q6A163 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
KRT39Q6A163 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
KRT39Q6A163 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
KRT39Q6A163 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.3■□□□□ 0.52
KRT39Q6A163 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
KRT39Q6A163 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
KRT39Q6A163 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
KRT39Q6A163 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC18.3■□□□□ 0.52
KRT39Q6A163 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
KRT39Q6A163 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
KRT39Q6A163 CSF3-203ENST00000394148 622 ntTSL 3 BASIC18.3■□□□□ 0.52
KRT39Q6A163 MRPL20P1-201ENST00000400819 433 ntBASIC18.3■□□□□ 0.52
KRT39Q6A163 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
KRT39Q6A163 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
KRT39Q6A163 AC108073.2-201ENST00000464002 357 ntBASIC18.3■□□□□ 0.52
KRT39Q6A163 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
KRT39Q6A163 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC18.3■□□□□ 0.52
KRT39Q6A163 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC18.3■□□□□ 0.52
KRT39Q6A163 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
KRT39Q6A163 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC18.3■□□□□ 0.52
KRT39Q6A163 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
KRT39Q6A163 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
KRT39Q6A163 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
KRT39Q6A163 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
KRT39Q6A163 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms