Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 CD82-202ENST00000342935 967 ntTSL 5 BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 PTCHD3P3-201ENST00000403073 906 ntBASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 AC254562.1-201ENST00000417586 456 ntBASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 AC010654.1-201ENST00000615722 808 ntBASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 AC060834.1-201ENST00000443027 2032 ntBASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC144BQ3MJ40 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.74
CCDC144BQ3MJ40 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 MRPL20P1-201ENST00000400819 433 ntBASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 IGHV3-52-201ENST00000519770 353 ntBASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 RIN3-211ENST00000557762 517 ntTSL 3 BASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 REXO1L11P-201ENST00000620964 1927 ntBASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CCDC144BQ3MJ40 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 MKNK2P1-201ENST00000437526 628 ntBASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 DDX43P3-201ENST00000441064 443 ntBASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 AC009336.1-201ENST00000608941 1553 ntBASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC144BQ3MJ40 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms