Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC15.19■□□□□ 0.02
CLRN1P58418 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN1P58418 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN1P58418 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC15.19■□□□□ 0.02
CLRN1P58418 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN1P58418 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN1P58418 AF238378.1-201ENST00000526806 358 ntBASIC15.19■□□□□ 0.02
CLRN1P58418 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN1P58418 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC15.19■□□□□ 0.02
CLRN1P58418 SDCCAG3P1-201ENST00000589292 1150 ntBASIC15.19■□□□□ 0.02
CLRN1P58418 AL139424.1-201ENST00000607572 797 ntBASIC15.19■□□□□ 0.02
CLRN1P58418 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN1P58418 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CLRN1P58418 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN1P58418 AL021920.2-201ENST00000624828 1351 ntBASIC15.19■□□□□ 0.02
CLRN1P58418 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN1P58418 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN1P58418 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN1P58418 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN1P58418 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CLRN1P58418 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN1P58418 AL590787.1-201ENST00000568856 1315 ntBASIC15.18■□□□□ 0.02
CLRN1P58418 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN1P58418 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN1P58418 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC15.18■□□□□ 0.02
CLRN1P58418 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN1P58418 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN1P58418 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN1P58418 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC15.18■□□□□ 0.02
CLRN1P58418 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN1P58418 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC15.18■□□□□ 0.02
CLRN1P58418 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC15.18■□□□□ 0.02
CLRN1P58418 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN1P58418 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN1P58418 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN1P58418 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC15.18■□□□□ 0.02
CLRN1P58418 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN1P58418 RAB17-203ENST00000409576 466 ntTSL 3 BASIC15.18■□□□□ 0.02
CLRN1P58418 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC15.18■□□□□ 0.02
CLRN1P58418 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC15.18■□□□□ 0.02
CLRN1P58418 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC15.18■□□□□ 0.02
CLRN1P58418 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC15.18■□□□□ 0.02
CLRN1P58418 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN1P58418 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
CLRN1P58418 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC15.18■□□□□ 0.02
CLRN1P58418 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.02
CLRN1P58418 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
CLRN1P58418 HNRNPRP1-201ENST00000453465 1695 ntBASIC15.18■□□□□ 0.02
CLRN1P58418 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC15.18■□□□□ 0.02
CLRN1P58418 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
CLRN1P58418 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN1P58418 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN1P58418 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN1P58418 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN1P58418 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLRN1P58418 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
CLRN1P58418 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CLRN1P58418 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN1P58418 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC15.17■□□□□ 0.02
CLRN1P58418 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN1P58418 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
CLRN1P58418 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN1P58418 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN1P58418 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
CLRN1P58418 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC15.17■□□□□ 0.02
CLRN1P58418 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.17■□□□□ 0.02
CLRN1P58418 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN1P58418 AC243591.1-201ENST00000452967 1364 ntBASIC15.17■□□□□ 0.02
CLRN1P58418 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC15.17■□□□□ 0.02
CLRN1P58418 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN1P58418 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN1P58418 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC15.17■□□□□ 0.02
CLRN1P58418 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC15.17■□□□□ 0.02
CLRN1P58418 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN1P58418 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC15.17■□□□□ 0.02
CLRN1P58418 AC073648.2-201ENST00000510116 352 ntBASIC15.17■□□□□ 0.02
CLRN1P58418 AP002490.2-201ENST00000524791 560 ntBASIC15.17■□□□□ 0.02
CLRN1P58418 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC15.17■□□□□ 0.02
CLRN1P58418 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC15.17■□□□□ 0.02
CLRN1P58418 BMF-207ENST00000559701 630 ntTSL 3 BASIC15.17■□□□□ 0.02
CLRN1P58418 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC15.17■□□□□ 0.02
CLRN1P58418 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC15.17■□□□□ 0.02
CLRN1P58418 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC15.17■□□□□ 0.02
CLRN1P58418 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN1P58418 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC15.17■□□□□ 0.02
CLRN1P58418 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC15.17■□□□□ 0.02
CLRN1P58418 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN1P58418 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC15.17■□□□□ 0.02
CLRN1P58418 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC15.17■□□□□ 0.02
CLRN1P58418 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CLRN1P58418 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC15.17■□□□□ 0.02
CLRN1P58418 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN1P58418 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC15.17■□□□□ 0.02
CLRN1P58418 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CLRN1P58418 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN1P58418 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN1P58418 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN1P58418 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CLRN1P58418 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC15.17■□□□□ 0.02
CLRN1P58418 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms