Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLDN6P56747 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC16.25■□□□□ 0.19
CLDN6P56747 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CLDN6P56747 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CLDN6P56747 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
CLDN6P56747 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLDN6P56747 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CLDN6P56747 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CLDN6P56747 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC16.25■□□□□ 0.19
CLDN6P56747 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLDN6P56747 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CLDN6P56747 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLDN6P56747 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLDN6P56747 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.25■□□□□ 0.19
CLDN6P56747 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.25■□□□□ 0.19
CLDN6P56747 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
CLDN6P56747 MRPS18AP1-201ENST00000414458 589 ntBASIC16.25■□□□□ 0.19
CLDN6P56747 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC16.25■□□□□ 0.19
CLDN6P56747 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLDN6P56747 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.25■□□□□ 0.19
CLDN6P56747 ALG1L8P-201ENST00000533887 760 ntBASIC16.25■□□□□ 0.19
CLDN6P56747 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.25■□□□□ 0.19
CLDN6P56747 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.25■□□□□ 0.19
CLDN6P56747 MIR4453-201ENST00000584019 89 ntBASIC16.25■□□□□ 0.19
CLDN6P56747 AL158211.3-201ENST00000607385 239 ntBASIC16.25■□□□□ 0.19
CLDN6P56747 AL161645.1-201ENST00000622716 1255 ntBASIC16.25■□□□□ 0.19
CLDN6P56747 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC16.25■□□□□ 0.19
CLDN6P56747 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC16.25■□□□□ 0.19
CLDN6P56747 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.25■□□□□ 0.19
CLDN6P56747 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
CLDN6P56747 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLDN6P56747 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
CLDN6P56747 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLDN6P56747 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLDN6P56747 AL133373.2-201ENST00000623187 2828 ntBASIC16.25■□□□□ 0.19
CLDN6P56747 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
CLDN6P56747 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
CLDN6P56747 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CLDN6P56747 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLDN6P56747 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLDN6P56747 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLDN6P56747 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLDN6P56747 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLDN6P56747 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.24■□□□□ 0.19
CLDN6P56747 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLDN6P56747 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.24■□□□□ 0.19
CLDN6P56747 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLDN6P56747 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLDN6P56747 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLDN6P56747 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLDN6P56747 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLDN6P56747 NOC2LP2-201ENST00000407594 1944 ntBASIC16.24■□□□□ 0.19
CLDN6P56747 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CLDN6P56747 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
CLDN6P56747 GRAP-202ENST00000395635 834 ntTSL 2 BASIC16.24■□□□□ 0.19
CLDN6P56747 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.24■□□□□ 0.19
CLDN6P56747 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.24■□□□□ 0.19
CLDN6P56747 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.24■□□□□ 0.19
CLDN6P56747 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
CLDN6P56747 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLDN6P56747 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLDN6P56747 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.24■□□□□ 0.19
CLDN6P56747 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC16.24■□□□□ 0.19
CLDN6P56747 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLDN6P56747 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.24■□□□□ 0.19
CLDN6P56747 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLDN6P56747 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC16.24■□□□□ 0.19
CLDN6P56747 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLDN6P56747 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
CLDN6P56747 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CLDN6P56747 AC012569.1-201ENST00000591191 1524 ntBASIC16.24■□□□□ 0.19
CLDN6P56747 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLDN6P56747 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.24■□□□□ 0.19
CLDN6P56747 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
CLDN6P56747 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLDN6P56747 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLDN6P56747 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.23■□□□□ 0.19
CLDN6P56747 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.23■□□□□ 0.19
CLDN6P56747 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.23■□□□□ 0.19
CLDN6P56747 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLDN6P56747 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.23■□□□□ 0.19
CLDN6P56747 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
CLDN6P56747 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CLDN6P56747 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLDN6P56747 SPDYE7P-202ENST00000420373 878 ntBASIC16.23■□□□□ 0.19
CLDN6P56747 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLDN6P56747 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC16.23■□□□□ 0.19
CLDN6P56747 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLDN6P56747 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLDN6P56747 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CLDN6P56747 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLDN6P56747 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLDN6P56747 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CLDN6P56747 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLDN6P56747 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CLDN6P56747 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.23■□□□□ 0.19
CLDN6P56747 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CLDN6P56747 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.22■□□□□ 0.19
CLDN6P56747 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.19
CLDN6P56747 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms