Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HADHAP40939 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.2■□□□□ 0.34
HADHAP40939 AC004870.1-201ENST00000315132 882 ntBASIC17.2■□□□□ 0.34
HADHAP40939 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
HADHAP40939 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HADHAP40939 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HADHAP40939 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC17.2■□□□□ 0.34
HADHAP40939 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC17.2■□□□□ 0.34
HADHAP40939 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
HADHAP40939 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.2■□□□□ 0.34
HADHAP40939 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC17.2■□□□□ 0.34
HADHAP40939 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.2■□□□□ 0.34
HADHAP40939 AC139887.3-201ENST00000568585 713 ntBASIC17.2■□□□□ 0.34
HADHAP40939 RN7SL510P-201ENST00000581311 263 ntBASIC17.2■□□□□ 0.34
HADHAP40939 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HADHAP40939 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
HADHAP40939 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
HADHAP40939 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HADHAP40939 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HADHAP40939 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.2■□□□□ 0.34
HADHAP40939 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
HADHAP40939 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HADHAP40939 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.2■□□□□ 0.34
HADHAP40939 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HADHAP40939 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HADHAP40939 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.2■□□□□ 0.34
HADHAP40939 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HADHAP40939 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
HADHAP40939 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
HADHAP40939 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
HADHAP40939 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
HADHAP40939 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
HADHAP40939 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.19■□□□□ 0.34
HADHAP40939 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
HADHAP40939 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.19■□□□□ 0.34
HADHAP40939 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
HADHAP40939 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
HADHAP40939 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
HADHAP40939 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
HADHAP40939 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HADHAP40939 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HADHAP40939 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
HADHAP40939 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.19■□□□□ 0.34
HADHAP40939 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HADHAP40939 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HADHAP40939 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HADHAP40939 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
HADHAP40939 EMBP1-201ENST00000458200 901 ntBASIC17.19■□□□□ 0.34
HADHAP40939 AC073648.2-201ENST00000510116 352 ntBASIC17.19■□□□□ 0.34
HADHAP40939 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HADHAP40939 AP002490.2-201ENST00000524791 560 ntBASIC17.19■□□□□ 0.34
HADHAP40939 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HADHAP40939 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.19■□□□□ 0.34
HADHAP40939 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.19■□□□□ 0.34
HADHAP40939 AL353135.1-201ENST00000606729 504 ntBASIC17.19■□□□□ 0.34
HADHAP40939 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
HADHAP40939 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HADHAP40939 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
HADHAP40939 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
HADHAP40939 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HADHAP40939 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
HADHAP40939 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.19■□□□□ 0.34
HADHAP40939 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HADHAP40939 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HADHAP40939 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HADHAP40939 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HADHAP40939 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.19■□□□□ 0.34
HADHAP40939 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HADHAP40939 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HADHAP40939 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HADHAP40939 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HADHAP40939 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.18■□□□□ 0.34
HADHAP40939 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HADHAP40939 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HADHAP40939 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.18■□□□□ 0.34
HADHAP40939 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.18■□□□□ 0.34
HADHAP40939 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
HADHAP40939 STK24-203ENST00000397517 4578 ntTSL 2 BASIC17.18■□□□□ 0.34
HADHAP40939 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HADHAP40939 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.18■□□□□ 0.34
HADHAP40939 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.18■□□□□ 0.34
HADHAP40939 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.18■□□□□ 0.34
HADHAP40939 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.18■□□□□ 0.34
HADHAP40939 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.18■□□□□ 0.34
HADHAP40939 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC17.18■□□□□ 0.34
HADHAP40939 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.18■□□□□ 0.34
HADHAP40939 AL121912.1-201ENST00000603683 238 ntBASIC17.18■□□□□ 0.34
HADHAP40939 AC064862.7-201ENST00000604520 867 ntBASIC17.18■□□□□ 0.34
HADHAP40939 AL139424.1-201ENST00000607572 797 ntBASIC17.18■□□□□ 0.34
HADHAP40939 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.18■□□□□ 0.34
HADHAP40939 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
HADHAP40939 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.18■□□□□ 0.34
HADHAP40939 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HADHAP40939 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
HADHAP40939 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HADHAP40939 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HADHAP40939 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HADHAP40939 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HADHAP40939 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HADHAP40939 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms