Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRCA1P38398 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BRCA1P38398 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
BRCA1P38398 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC20.27■□□□□ 0.84
BRCA1P38398 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
BRCA1P38398 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BRCA1P38398 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC20.27■□□□□ 0.84
BRCA1P38398 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.27■□□□□ 0.84
BRCA1P38398 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC20.27■□□□□ 0.84
BRCA1P38398 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BRCA1P38398 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
BRCA1P38398 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BRCA1P38398 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BRCA1P38398 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BRCA1P38398 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC20.27■□□□□ 0.84
BRCA1P38398 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BRCA1P38398 AC233724.13-201ENST00000598383 410 ntBASIC20.27■□□□□ 0.84
BRCA1P38398 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC20.27■□□□□ 0.84
BRCA1P38398 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC20.27■□□□□ 0.84
BRCA1P38398 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BRCA1P38398 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
BRCA1P38398 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
BRCA1P38398 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
BRCA1P38398 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
BRCA1P38398 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
BRCA1P38398 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
BRCA1P38398 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC20.27■□□□□ 0.83
BRCA1P38398 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
BRCA1P38398 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
BRCA1P38398 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
BRCA1P38398 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
BRCA1P38398 GOLGA2P4-201ENST00000441462 777 ntBASIC20.26■□□□□ 0.83
BRCA1P38398 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC20.26■□□□□ 0.83
BRCA1P38398 AC098859.1-201ENST00000502915 1238 ntBASIC20.26■□□□□ 0.83
BRCA1P38398 RNA5SP412-201ENST00000516234 123 ntBASIC20.26■□□□□ 0.83
BRCA1P38398 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC20.26■□□□□ 0.83
BRCA1P38398 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
BRCA1P38398 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
BRCA1P38398 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
BRCA1P38398 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
BRCA1P38398 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
BRCA1P38398 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
BRCA1P38398 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
BRCA1P38398 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
BRCA1P38398 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
BRCA1P38398 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC20.26■□□□□ 0.83
BRCA1P38398 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
BRCA1P38398 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
BRCA1P38398 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
BRCA1P38398 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
BRCA1P38398 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
BRCA1P38398 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.26■□□□□ 0.83
BRCA1P38398 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
BRCA1P38398 RAD18-204ENST00000418463 563 ntTSL 4 BASIC20.26■□□□□ 0.83
BRCA1P38398 RAD18-205ENST00000421052 582 ntTSL 3 BASIC20.26■□□□□ 0.83
BRCA1P38398 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC20.26■□□□□ 0.83
BRCA1P38398 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
BRCA1P38398 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
BRCA1P38398 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
BRCA1P38398 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
BRCA1P38398 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
BRCA1P38398 RHOQP1-201ENST00000555758 579 ntBASIC20.26■□□□□ 0.83
BRCA1P38398 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC20.26■□□□□ 0.83
BRCA1P38398 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
BRCA1P38398 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
BRCA1P38398 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
BRCA1P38398 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
BRCA1P38398 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
BRCA1P38398 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC20.25■□□□□ 0.83
BRCA1P38398 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
BRCA1P38398 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
BRCA1P38398 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
BRCA1P38398 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC20.25■□□□□ 0.83
BRCA1P38398 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC20.25■□□□□ 0.83
BRCA1P38398 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC20.25■□□□□ 0.83
BRCA1P38398 EMC4-209ENST00000559421 497 ntTSL 2 BASIC20.25■□□□□ 0.83
BRCA1P38398 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC20.25■□□□□ 0.83
BRCA1P38398 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
BRCA1P38398 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
BRCA1P38398 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC20.25■□□□□ 0.83
BRCA1P38398 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
BRCA1P38398 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC20.25■□□□□ 0.83
BRCA1P38398 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
BRCA1P38398 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
BRCA1P38398 AC108860.2-201ENST00000562760 2183 ntBASIC20.25■□□□□ 0.83
BRCA1P38398 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
BRCA1P38398 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC20.25■□□□□ 0.83
BRCA1P38398 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
BRCA1P38398 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
BRCA1P38398 NSL1-201ENST00000366976 722 ntTSL 2 BASIC20.24■□□□□ 0.83
BRCA1P38398 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC20.24■□□□□ 0.83
BRCA1P38398 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC20.24■□□□□ 0.83
BRCA1P38398 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC20.24■□□□□ 0.83
BRCA1P38398 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC20.24■□□□□ 0.83
BRCA1P38398 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC20.24■□□□□ 0.83
BRCA1P38398 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
BRCA1P38398 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
BRCA1P38398 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
BRCA1P38398 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
BRCA1P38398 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms