Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC21.13■□□□□ 0.97
RFC4P35249 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC21.13■□□□□ 0.97
RFC4P35249 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC21.13■□□□□ 0.97
RFC4P35249 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC21.13■□□□□ 0.97
RFC4P35249 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC21.13■□□□□ 0.97
RFC4P35249 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC21.13■□□□□ 0.97
RFC4P35249 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC21.13■□□□□ 0.97
RFC4P35249 GIMAP3P-201ENST00000495150 836 ntBASIC21.13■□□□□ 0.97
RFC4P35249 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RFC4P35249 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC21.13■□□□□ 0.97
RFC4P35249 LITAF-210ENST00000571976 548 ntTSL 2 BASIC21.13■□□□□ 0.97
RFC4P35249 LITAF-214ENST00000574703 486 ntTSL 2 BASIC21.13■□□□□ 0.97
RFC4P35249 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC21.13■□□□□ 0.97
RFC4P35249 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC21.13■□□□□ 0.97
RFC4P35249 RN7SL828P-201ENST00000607615 303 ntBASIC21.13■□□□□ 0.97
RFC4P35249 RNA5-8SN1-201ENST00000610460 153 ntBASIC21.13■□□□□ 0.97
RFC4P35249 RNA5-8SN5-202ENST00000612463 153 ntBASIC21.13■□□□□ 0.97
RFC4P35249 RNA5-8SN4-201ENST00000613359 153 ntBASIC21.13■□□□□ 0.97
RFC4P35249 RNA5-8SN5-201ENST00000619471 153 ntBASIC21.13■□□□□ 0.97
RFC4P35249 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC21.13■□□□□ 0.97
RFC4P35249 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RFC4P35249 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC21.13■□□□□ 0.97
RFC4P35249 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
RFC4P35249 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
RFC4P35249 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RFC4P35249 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
RFC4P35249 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC21.12■□□□□ 0.97
RFC4P35249 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC21.12■□□□□ 0.97
RFC4P35249 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
RFC4P35249 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
RFC4P35249 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
RFC4P35249 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
RFC4P35249 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
RFC4P35249 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RFC4P35249 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RFC4P35249 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC21.12■□□□□ 0.97
RFC4P35249 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC21.12■□□□□ 0.97
RFC4P35249 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RFC4P35249 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC21.12■□□□□ 0.97
RFC4P35249 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
RFC4P35249 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC21.12■□□□□ 0.97
RFC4P35249 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC21.12■□□□□ 0.97
RFC4P35249 AC022494.1-201ENST00000466044 728 ntBASIC21.12■□□□□ 0.97
RFC4P35249 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
RFC4P35249 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC21.12■□□□□ 0.97
RFC4P35249 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
RFC4P35249 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC21.12■□□□□ 0.97
RFC4P35249 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC21.12■□□□□ 0.97
RFC4P35249 AC004840.1-201ENST00000636359 365 ntBASIC21.12■□□□□ 0.97
RFC4P35249 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
RFC4P35249 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC21.12■□□□□ 0.97
RFC4P35249 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC21.12■□□□□ 0.97
RFC4P35249 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
RFC4P35249 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RFC4P35249 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RFC4P35249 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
RFC4P35249 KRT8P49-201ENST00000604166 1432 ntBASIC21.12■□□□□ 0.97
RFC4P35249 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
RFC4P35249 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RFC4P35249 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RFC4P35249 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
RFC4P35249 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
RFC4P35249 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
RFC4P35249 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC21.11■□□□□ 0.97
RFC4P35249 AL021920.2-201ENST00000624828 1351 ntBASIC21.11■□□□□ 0.97
RFC4P35249 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
RFC4P35249 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
RFC4P35249 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC21.11■□□□□ 0.97
RFC4P35249 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC21.11■□□□□ 0.97
RFC4P35249 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
RFC4P35249 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
RFC4P35249 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RFC4P35249 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RFC4P35249 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RFC4P35249 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RFC4P35249 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RFC4P35249 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC21.11■□□□□ 0.97
RFC4P35249 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC21.11■□□□□ 0.97
RFC4P35249 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RFC4P35249 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RFC4P35249 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RFC4P35249 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RFC4P35249 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
RFC4P35249 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
RFC4P35249 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RFC4P35249 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RFC4P35249 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC21.1■□□□□ 0.97
RFC4P35249 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
RFC4P35249 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RFC4P35249 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RFC4P35249 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
RFC4P35249 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RFC4P35249 DGCR5-201ENST00000399539 862 ntBASIC21.1■□□□□ 0.97
RFC4P35249 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
RFC4P35249 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC21.1■□□□□ 0.97
RFC4P35249 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC21.1■□□□□ 0.97
RFC4P35249 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC21.1■□□□□ 0.97
RFC4P35249 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC21.1■□□□□ 0.97
RFC4P35249 AC010336.2-201ENST00000564226 506 ntBASIC21.1■□□□□ 0.97
RFC4P35249 ARL16-202ENST00000570561 768 ntTSL 2 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms