Protein–RNA interactions for Protein: P20036

HLA-DPA1, HLA class II histocompatibility antigen, DP alpha 1 chain, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1P20036 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DPA1P20036 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
HLA-DPA1P20036 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DPA1P20036 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
HLA-DPA1P20036 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DPA1P20036 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.15■□□□□ 0.34
HLA-DPA1P20036 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.15■□□□□ 0.34
HLA-DPA1P20036 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DPA1P20036 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
HLA-DPA1P20036 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.15■□□□□ 0.34
HLA-DPA1P20036 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DPA1P20036 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
HLA-DPA1P20036 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DPA1P20036 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DPA1P20036 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DPA1P20036 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DPA1P20036 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DPA1P20036 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.34
HLA-DPA1P20036 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DPA1P20036 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DPA1P20036 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
HLA-DPA1P20036 KRT8P49-201ENST00000604166 1432 ntBASIC17.14■□□□□ 0.33
HLA-DPA1P20036 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
HLA-DPA1P20036 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DPA1P20036 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.14■□□□□ 0.33
HLA-DPA1P20036 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DPA1P20036 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.14■□□□□ 0.33
HLA-DPA1P20036 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.14■□□□□ 0.33
HLA-DPA1P20036 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.14■□□□□ 0.33
HLA-DPA1P20036 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
HLA-DPA1P20036 AC087163.2-201ENST00000457299 853 ntBASIC17.14■□□□□ 0.33
HLA-DPA1P20036 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.14■□□□□ 0.33
HLA-DPA1P20036 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.14■□□□□ 0.33
HLA-DPA1P20036 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.14■□□□□ 0.33
HLA-DPA1P20036 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.14■□□□□ 0.33
HLA-DPA1P20036 KLK8-205ENST00000593490 267 ntTSL 3 BASIC17.14■□□□□ 0.33
HLA-DPA1P20036 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.14■□□□□ 0.33
HLA-DPA1P20036 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.14■□□□□ 0.33
HLA-DPA1P20036 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DPA1P20036 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.14■□□□□ 0.33
HLA-DPA1P20036 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DPA1P20036 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
HLA-DPA1P20036 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DPA1P20036 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DPA1P20036 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DPA1P20036 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.14■□□□□ 0.33
HLA-DPA1P20036 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DPA1P20036 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC17.14■□□□□ 0.33
HLA-DPA1P20036 AC009053.2-201ENST00000563701 2365 ntBASIC17.14■□□□□ 0.33
HLA-DPA1P20036 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DPA1P20036 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17.13■□□□□ 0.33
HLA-DPA1P20036 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DPA1P20036 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DPA1P20036 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
HLA-DPA1P20036 AC106886.4-201ENST00000623557 2502 ntBASIC17.13■□□□□ 0.33
HLA-DPA1P20036 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DPA1P20036 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
HLA-DPA1P20036 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DPA1P20036 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DPA1P20036 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DPA1P20036 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DPA1P20036 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
HLA-DPA1P20036 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.13■□□□□ 0.33
HLA-DPA1P20036 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DPA1P20036 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DPA1P20036 AL031284.1-201ENST00000419297 478 ntBASIC17.13■□□□□ 0.33
HLA-DPA1P20036 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DPA1P20036 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.13■□□□□ 0.33
HLA-DPA1P20036 AL662844.1-201ENST00000546340 181 ntBASIC17.13■□□□□ 0.33
HLA-DPA1P20036 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.13■□□□□ 0.33
HLA-DPA1P20036 AC012640.2-201ENST00000561606 901 ntBASIC17.13■□□□□ 0.33
HLA-DPA1P20036 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
HLA-DPA1P20036 AC008667.4-201ENST00000607370 168 ntBASIC17.13■□□□□ 0.33
HLA-DPA1P20036 AC005593.1-201ENST00000624894 515 ntBASIC17.13■□□□□ 0.33
HLA-DPA1P20036 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DPA1P20036 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.13■□□□□ 0.33
HLA-DPA1P20036 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DPA1P20036 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DPA1P20036 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DPA1P20036 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DPA1P20036 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.13■□□□□ 0.33
HLA-DPA1P20036 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
HLA-DPA1P20036 PCDHB17P-201ENST00000539533 2393 ntBASIC17.13■□□□□ 0.33
HLA-DPA1P20036 AP002414.3-201ENST00000589352 1468 ntBASIC17.12■□□□□ 0.33
HLA-DPA1P20036 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.12■□□□□ 0.33
HLA-DPA1P20036 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DPA1P20036 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DPA1P20036 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC17.12■□□□□ 0.33
HLA-DPA1P20036 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DPA1P20036 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
HLA-DPA1P20036 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.12■□□□□ 0.33
HLA-DPA1P20036 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.12■□□□□ 0.33
HLA-DPA1P20036 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17.12■□□□□ 0.33
HLA-DPA1P20036 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DPA1P20036 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC17.12■□□□□ 0.33
HLA-DPA1P20036 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC17.12■□□□□ 0.33
HLA-DPA1P20036 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
HLA-DPA1P20036 IGHV3-65-201ENST00000523210 341 ntBASIC17.12■□□□□ 0.33
HLA-DPA1P20036 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.12■□□□□ 0.33
HLA-DPA1P20036 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms