Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCNAP12004 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
PCNAP12004 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.6■□□□□ 0.25
PCNAP12004 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.6■□□□□ 0.25
PCNAP12004 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.6■□□□□ 0.25
PCNAP12004 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCNAP12004 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.6■□□□□ 0.25
PCNAP12004 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PCNAP12004 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCNAP12004 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.6■□□□□ 0.25
PCNAP12004 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.6■□□□□ 0.25
PCNAP12004 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCNAP12004 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.6■□□□□ 0.25
PCNAP12004 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.6■□□□□ 0.25
PCNAP12004 FLJ38576-201ENST00000623820 2459 ntBASIC16.6■□□□□ 0.25
PCNAP12004 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.6■□□□□ 0.25
PCNAP12004 AC097637.2-201ENST00000624096 1997 ntBASIC16.6■□□□□ 0.25
PCNAP12004 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCNAP12004 AP005117.1-201ENST00000584346 1413 ntBASIC16.6■□□□□ 0.25
PCNAP12004 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
PCNAP12004 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCNAP12004 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCNAP12004 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCNAP12004 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PCNAP12004 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.59■□□□□ 0.25
PCNAP12004 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PCNAP12004 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCNAP12004 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.59■□□□□ 0.25
PCNAP12004 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.59■□□□□ 0.25
PCNAP12004 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCNAP12004 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
PCNAP12004 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
PCNAP12004 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PCNAP12004 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.59■□□□□ 0.25
PCNAP12004 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.59■□□□□ 0.25
PCNAP12004 BX005266.1-201ENST00000473402 457 ntBASIC16.59■□□□□ 0.25
PCNAP12004 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.59■□□□□ 0.25
PCNAP12004 KRT18P31-201ENST00000506277 1292 ntBASIC16.59■□□□□ 0.25
PCNAP12004 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.59■□□□□ 0.25
PCNAP12004 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
PCNAP12004 AC091304.2-201ENST00000564639 760 ntBASIC16.59■□□□□ 0.25
PCNAP12004 AC004817.3-201ENST00000602957 2129 ntBASIC16.59■□□□□ 0.25
PCNAP12004 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.59■□□□□ 0.25
PCNAP12004 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.59■□□□□ 0.25
PCNAP12004 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCNAP12004 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
PCNAP12004 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.59■□□□□ 0.25
PCNAP12004 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCNAP12004 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.59■□□□□ 0.25
PCNAP12004 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCNAP12004 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
PCNAP12004 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCNAP12004 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
PCNAP12004 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCNAP12004 AC079776.2-201ENST00000641154 1609 ntBASIC16.59■□□□□ 0.25
PCNAP12004 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCNAP12004 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCNAP12004 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
PCNAP12004 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.59■□□□□ 0.25
PCNAP12004 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCNAP12004 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PCNAP12004 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PCNAP12004 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCNAP12004 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCNAP12004 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
PCNAP12004 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.58■□□□□ 0.25
PCNAP12004 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
PCNAP12004 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PCNAP12004 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.58■□□□□ 0.25
PCNAP12004 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PCNAP12004 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.58■□□□□ 0.25
PCNAP12004 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
PCNAP12004 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.58■□□□□ 0.25
PCNAP12004 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCNAP12004 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCNAP12004 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCNAP12004 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PCNAP12004 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.58■□□□□ 0.24
PCNAP12004 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.58■□□□□ 0.24
PCNAP12004 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.58■□□□□ 0.24
PCNAP12004 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PCNAP12004 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.58■□□□□ 0.24
PCNAP12004 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.58■□□□□ 0.24
PCNAP12004 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.58■□□□□ 0.24
PCNAP12004 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCNAP12004 AC012313.10-201ENST00000623509 926 ntBASIC16.58■□□□□ 0.24
PCNAP12004 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.58■□□□□ 0.24
PCNAP12004 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.58■□□□□ 0.24
PCNAP12004 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCNAP12004 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.58■□□□□ 0.24
PCNAP12004 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCNAP12004 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCNAP12004 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.58■□□□□ 0.24
PCNAP12004 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCNAP12004 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.58■□□□□ 0.24
PCNAP12004 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PCNAP12004 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCNAP12004 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCNAP12004 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCNAP12004 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms