Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC067863.1-201ENST00000494933 530 ntBASIC16.56■□□□□ 0.24
SDC3O75056 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.56■□□□□ 0.24
SDC3O75056 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC16.56■□□□□ 0.24
SDC3O75056 MIR4745-201ENST00000577608 62 ntBASIC16.56■□□□□ 0.24
SDC3O75056 AL009183.1-201ENST00000603760 355 ntBASIC16.56■□□□□ 0.24
SDC3O75056 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
SDC3O75056 AL136317.3-201ENST00000618497 906 ntBASIC16.56■□□□□ 0.24
SDC3O75056 AL161645.1-201ENST00000622716 1255 ntBASIC16.56■□□□□ 0.24
SDC3O75056 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
SDC3O75056 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
SDC3O75056 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.56■□□□□ 0.24
SDC3O75056 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SDC3O75056 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
SDC3O75056 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SDC3O75056 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SDC3O75056 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SDC3O75056 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SDC3O75056 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC16.56■□□□□ 0.24
SDC3O75056 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SDC3O75056 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.56■□□□□ 0.24
SDC3O75056 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SDC3O75056 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SDC3O75056 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.55■□□□□ 0.24
SDC3O75056 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SDC3O75056 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.55■□□□□ 0.24
SDC3O75056 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.55■□□□□ 0.24
SDC3O75056 AL390961.4-201ENST00000623958 2535 ntBASIC16.55■□□□□ 0.24
SDC3O75056 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SDC3O75056 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SDC3O75056 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
SDC3O75056 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SDC3O75056 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SDC3O75056 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC16.55■□□□□ 0.24
SDC3O75056 AC069262.1-201ENST00000539058 672 ntBASIC16.55■□□□□ 0.24
SDC3O75056 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
SDC3O75056 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC16.55■□□□□ 0.24
SDC3O75056 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC16.55■□□□□ 0.24
SDC3O75056 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SDC3O75056 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.55■□□□□ 0.24
SDC3O75056 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.55■□□□□ 0.24
SDC3O75056 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
SDC3O75056 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.55■□□□□ 0.24
SDC3O75056 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SDC3O75056 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SDC3O75056 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.55■□□□□ 0.24
SDC3O75056 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.55■□□□□ 0.24
SDC3O75056 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SDC3O75056 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.54■□□□□ 0.24
SDC3O75056 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SDC3O75056 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SDC3O75056 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SDC3O75056 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
SDC3O75056 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.54■□□□□ 0.24
SDC3O75056 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
SDC3O75056 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SDC3O75056 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.54■□□□□ 0.24
SDC3O75056 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
SDC3O75056 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SDC3O75056 AKAP8P1-201ENST00000434743 1349 ntBASIC16.54■□□□□ 0.24
SDC3O75056 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SDC3O75056 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SDC3O75056 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.54■□□□□ 0.24
SDC3O75056 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SDC3O75056 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SDC3O75056 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC16.54■□□□□ 0.24
SDC3O75056 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
SDC3O75056 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
SDC3O75056 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SDC3O75056 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.54■□□□□ 0.24
SDC3O75056 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SDC3O75056 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SDC3O75056 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SDC3O75056 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.54■□□□□ 0.24
SDC3O75056 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.54■□□□□ 0.24
SDC3O75056 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SDC3O75056 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
SDC3O75056 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
SDC3O75056 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.54■□□□□ 0.24
SDC3O75056 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SDC3O75056 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
SDC3O75056 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SDC3O75056 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SDC3O75056 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SDC3O75056 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SDC3O75056 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SDC3O75056 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SDC3O75056 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SDC3O75056 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
SDC3O75056 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
SDC3O75056 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SDC3O75056 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.53■□□□□ 0.24
SDC3O75056 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
SDC3O75056 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SDC3O75056 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
SDC3O75056 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
SDC3O75056 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SDC3O75056 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
SDC3O75056 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SDC3O75056 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SDC3O75056 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms