Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
FOXN3O00409 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
FOXN3O00409 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
FOXN3O00409 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
FOXN3O00409 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
FOXN3O00409 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
FOXN3O00409 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
FOXN3O00409 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
FOXN3O00409 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
FOXN3O00409 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC18.16■□□□□ 0.5
FOXN3O00409 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
FOXN3O00409 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
FOXN3O00409 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC18.16■□□□□ 0.5
FOXN3O00409 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
FOXN3O00409 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
FOXN3O00409 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
FOXN3O00409 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
FOXN3O00409 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
FOXN3O00409 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC18.16■□□□□ 0.5
FOXN3O00409 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
FOXN3O00409 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
FOXN3O00409 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC18.16■□□□□ 0.5
FOXN3O00409 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
FOXN3O00409 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.16■□□□□ 0.5
FOXN3O00409 AC073621.1-201ENST00000392730 636 ntBASIC18.16■□□□□ 0.5
FOXN3O00409 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC18.16■□□□□ 0.5
FOXN3O00409 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
FOXN3O00409 KRT18P27-201ENST00000427733 1299 ntBASIC18.16■□□□□ 0.5
FOXN3O00409 FAM197Y8-203ENST00000450145 560 ntBASIC18.16■□□□□ 0.5
FOXN3O00409 AC087163.2-201ENST00000457299 853 ntBASIC18.16■□□□□ 0.5
FOXN3O00409 OR7E14P-202ENST00000530490 1290 ntBASIC18.16■□□□□ 0.5
FOXN3O00409 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
FOXN3O00409 AC006557.2-201ENST00000592985 1240 ntBASIC18.16■□□□□ 0.5
FOXN3O00409 AL121912.1-201ENST00000603683 238 ntBASIC18.16■□□□□ 0.5
FOXN3O00409 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.16■□□□□ 0.5
FOXN3O00409 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.16■□□□□ 0.5
FOXN3O00409 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC18.16■□□□□ 0.5
FOXN3O00409 AL691432.3-201ENST00000621860 400 ntBASIC18.16■□□□□ 0.5
FOXN3O00409 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
FOXN3O00409 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
FOXN3O00409 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC18.16■□□□□ 0.5
FOXN3O00409 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
FOXN3O00409 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC18.16■□□□□ 0.5
FOXN3O00409 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
FOXN3O00409 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
FOXN3O00409 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
FOXN3O00409 AC002310.6-201ENST00000624451 1377 ntBASIC18.16■□□□□ 0.5
FOXN3O00409 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXN3O00409 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXN3O00409 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXN3O00409 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
FOXN3O00409 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXN3O00409 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXN3O00409 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
FOXN3O00409 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXN3O00409 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC18.15■□□□□ 0.5
FOXN3O00409 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
FOXN3O00409 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
FOXN3O00409 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC18.15■□□□□ 0.5
FOXN3O00409 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
FOXN3O00409 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC18.15■□□□□ 0.5
FOXN3O00409 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
FOXN3O00409 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.15■□□□□ 0.5
FOXN3O00409 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC18.15■□□□□ 0.5
FOXN3O00409 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.15■□□□□ 0.5
FOXN3O00409 AL805961.1-202ENST00000641562 540 ntBASIC18.15■□□□□ 0.5
FOXN3O00409 AF228730.7-201ENST00000641842 219 ntBASIC18.15■□□□□ 0.5
FOXN3O00409 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXN3O00409 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXN3O00409 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC18.15■□□□□ 0.5
FOXN3O00409 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXN3O00409 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC18.15■□□□□ 0.5
FOXN3O00409 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXN3O00409 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.15■□□□□ 0.5
FOXN3O00409 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXN3O00409 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXN3O00409 AC006277.1-201ENST00000624348 1610 ntBASIC18.15■□□□□ 0.5
FOXN3O00409 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXN3O00409 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXN3O00409 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXN3O00409 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC18.15■□□□□ 0.5
FOXN3O00409 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC18.15■□□□□ 0.5
FOXN3O00409 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC18.15■□□□□ 0.5
FOXN3O00409 TNRC18P3-201ENST00000441896 2691 ntBASIC18.15■□□□□ 0.5
FOXN3O00409 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXN3O00409 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.5
FOXN3O00409 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC18.14■□□□□ 0.5
FOXN3O00409 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
FOXN3O00409 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
FOXN3O00409 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
FOXN3O00409 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
FOXN3O00409 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
FOXN3O00409 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
FOXN3O00409 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
FOXN3O00409 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
FOXN3O00409 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
FOXN3O00409 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
FOXN3O00409 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
FOXN3O00409 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.14■□□□□ 0.49
FOXN3O00409 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms