Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 FALEC-201ENST00000416894 566 ntTSL 3 BASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 AP000344.2-201ENST00000512987 629 ntBASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 METTL23-205ENST00000588302 925 ntTSL 5 BASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 PCDHA12-202ENST00000613593 2588 ntBASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 STOM-202ENST00000347359 870 ntTSL 2 BASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 AL513480.1-201ENST00000451731 511 ntBASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 CCND1-203ENST00000536559 553 ntTSL 3 BASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 REXO1L3P-201ENST00000622202 1288 ntBASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 AL645728.2-201ENST00000641974 660 ntBASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 AL355312.1-201ENST00000407115 2176 ntBASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 HNRNPRP1-201ENST00000453465 1695 ntBASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 AL121761.2-201ENST00000598007 1648 ntBASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.59■□□□□ 0.57
TRAIPQ9BWF2 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TRAIPQ9BWF2 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TRAIPQ9BWF2 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
TRAIPQ9BWF2 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
TRAIPQ9BWF2 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.58■□□□□ 0.57
TRAIPQ9BWF2 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
TRAIPQ9BWF2 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TRAIPQ9BWF2 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
TRAIPQ9BWF2 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
TRAIPQ9BWF2 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
TRAIPQ9BWF2 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
TRAIPQ9BWF2 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
TRAIPQ9BWF2 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC18.58■□□□□ 0.56
TRAIPQ9BWF2 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC18.58■□□□□ 0.56
TRAIPQ9BWF2 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
TRAIPQ9BWF2 AC027796.2-201ENST00000575326 344 ntBASIC18.58■□□□□ 0.56
TRAIPQ9BWF2 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC18.58■□□□□ 0.56
TRAIPQ9BWF2 AL513210.1-201ENST00000629608 234 ntBASIC18.58■□□□□ 0.56
TRAIPQ9BWF2 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TRAIPQ9BWF2 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
TRAIPQ9BWF2 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
TRAIPQ9BWF2 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.58■□□□□ 0.56
TRAIPQ9BWF2 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
TRAIPQ9BWF2 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TRAIPQ9BWF2 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
TRAIPQ9BWF2 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
TRAIPQ9BWF2 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TRAIPQ9BWF2 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
TRAIPQ9BWF2 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
TRAIPQ9BWF2 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TRAIPQ9BWF2 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms