Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PAAF1Q9BRP4 MIR770-201ENST00000390219 98 ntBASIC18.02■□□□□ 0.48
PAAF1Q9BRP4 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
PAAF1Q9BRP4 KRT18P32-201ENST00000424695 1287 ntBASIC18.02■□□□□ 0.48
PAAF1Q9BRP4 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
PAAF1Q9BRP4 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC18.02■□□□□ 0.48
PAAF1Q9BRP4 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
PAAF1Q9BRP4 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC18.02■□□□□ 0.48
PAAF1Q9BRP4 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC18.02■□□□□ 0.48
PAAF1Q9BRP4 CYP2A7P1-201ENST00000595391 815 ntBASIC18.02■□□□□ 0.48
PAAF1Q9BRP4 LINC02084-201ENST00000606069 1096 ntBASIC18.02■□□□□ 0.48
PAAF1Q9BRP4 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC18.02■□□□□ 0.48
PAAF1Q9BRP4 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC18.02■□□□□ 0.48
PAAF1Q9BRP4 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PAAF1Q9BRP4 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
PAAF1Q9BRP4 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PAAF1Q9BRP4 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
PAAF1Q9BRP4 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
PAAF1Q9BRP4 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.47
PAAF1Q9BRP4 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.02■□□□□ 0.47
PAAF1Q9BRP4 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC18.02■□□□□ 0.47
PAAF1Q9BRP4 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC18.02■□□□□ 0.47
PAAF1Q9BRP4 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PAAF1Q9BRP4 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.47
PAAF1Q9BRP4 AL021920.2-201ENST00000624828 1351 ntBASIC18.02■□□□□ 0.47
PAAF1Q9BRP4 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
PAAF1Q9BRP4 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
PAAF1Q9BRP4 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PAAF1Q9BRP4 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PAAF1Q9BRP4 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
PAAF1Q9BRP4 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 BSG-215ENST00000618006 1329 ntTSL 2 BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 WASH6P-202ENST00000359512 1437 ntBASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 HNRNPFP1-201ENST00000391730 1133 ntBASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 HLA-DRB6-201ENST00000411500 1235 ntBASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 AC025678.2-201ENST00000562061 970 ntBASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 Z92544.3-201ENST00000624747 417 ntBASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 AC016027.1-202ENST00000607927 1699 ntBASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC18.01■□□□□ 0.47
PAAF1Q9BRP4 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PAAF1Q9BRP4 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
PAAF1Q9BRP4 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC18■□□□□ 0.47
PAAF1Q9BRP4 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18■□□□□ 0.47
PAAF1Q9BRP4 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
PAAF1Q9BRP4 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PAAF1Q9BRP4 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC18■□□□□ 0.47
PAAF1Q9BRP4 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC18■□□□□ 0.47
PAAF1Q9BRP4 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC18■□□□□ 0.47
PAAF1Q9BRP4 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC18■□□□□ 0.47
PAAF1Q9BRP4 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC18■□□□□ 0.47
PAAF1Q9BRP4 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC18■□□□□ 0.47
PAAF1Q9BRP4 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC18■□□□□ 0.47
PAAF1Q9BRP4 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC18■□□□□ 0.47
PAAF1Q9BRP4 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC18■□□□□ 0.47
PAAF1Q9BRP4 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC18■□□□□ 0.47
PAAF1Q9BRP4 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC18■□□□□ 0.47
PAAF1Q9BRP4 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
PAAF1Q9BRP4 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC18■□□□□ 0.47
PAAF1Q9BRP4 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC18■□□□□ 0.47
PAAF1Q9BRP4 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC18■□□□□ 0.47
PAAF1Q9BRP4 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC18■□□□□ 0.47
PAAF1Q9BRP4 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
PAAF1Q9BRP4 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PAAF1Q9BRP4 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PAAF1Q9BRP4 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PAAF1Q9BRP4 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC18■□□□□ 0.47
PAAF1Q9BRP4 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms