Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 HNRNPA1P40-201ENST00000426371 1278 ntBASIC16.99■□□□□ 0.31
HMGB4Q8WW32 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 IGHV3-42-201ENST00000520410 361 ntBASIC16.99■□□□□ 0.31
HMGB4Q8WW32 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 AC026150.2-201ENST00000564693 1156 ntBASIC16.99■□□□□ 0.31
HMGB4Q8WW32 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 COMP-202ENST00000425807 2292 ntTSL 2 BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB4Q8WW32 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 AC008677.1-201ENST00000519230 1561 ntBASIC16.98■□□□□ 0.31
HMGB4Q8WW32 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 AC133963.1-201ENST00000504166 1679 ntBASIC16.98■□□□□ 0.31
HMGB4Q8WW32 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 TREML5P-201ENST00000421694 576 ntBASIC16.98■□□□□ 0.31
HMGB4Q8WW32 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 PNKD-204ENST00000436005 978 ntTSL 5 BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 TAF8-206ENST00000472818 719 ntTSL 2 BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 KRT8P23-201ENST00000560090 1207 ntBASIC16.98■□□□□ 0.31
HMGB4Q8WW32 LINC01225-203ENST00000563550 1244 ntBASIC16.98■□□□□ 0.31
HMGB4Q8WW32 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 FO538757.1-201ENST00000623083 1397 ntBASIC16.98■□□□□ 0.31
HMGB4Q8WW32 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
HMGB4Q8WW32 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB4Q8WW32 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.97■□□□□ 0.31
HMGB4Q8WW32 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.97■□□□□ 0.31
HMGB4Q8WW32 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB4Q8WW32 WASH6P-202ENST00000359512 1437 ntBASIC16.97■□□□□ 0.31
HMGB4Q8WW32 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
HMGB4Q8WW32 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
HMGB4Q8WW32 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB4Q8WW32 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB4Q8WW32 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB4Q8WW32 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC16.97■□□□□ 0.31
HMGB4Q8WW32 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB4Q8WW32 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB4Q8WW32 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.97■□□□□ 0.31
HMGB4Q8WW32 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
HMGB4Q8WW32 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.97■□□□□ 0.31
HMGB4Q8WW32 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB4Q8WW32 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB4Q8WW32 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.97■□□□□ 0.31
HMGB4Q8WW32 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.97■□□□□ 0.31
HMGB4Q8WW32 AC109635.5-201ENST00000533593 962 ntBASIC16.97■□□□□ 0.31
HMGB4Q8WW32 SLC25A39P2-201ENST00000537614 270 ntBASIC16.97■□□□□ 0.31
HMGB4Q8WW32 AC190387.1-201ENST00000551683 408 ntBASIC16.97■□□□□ 0.31
HMGB4Q8WW32 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC16.97■□□□□ 0.31
HMGB4Q8WW32 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
HMGB4Q8WW32 MIR6080-201ENST00000617359 66 ntBASIC16.97■□□□□ 0.31
HMGB4Q8WW32 AL390754.1-201ENST00000619088 582 ntBASIC16.97■□□□□ 0.31
HMGB4Q8WW32 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB4Q8WW32 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms