Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 PTK2-216ENST00000519881 863 ntTSL 3 BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 NME3-204ENST00000563498 920 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 AC116407.4-201ENST00000623319 1061 ntBASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 PMPCAP1-201ENST00000508114 1576 ntBASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC54Q8NEL0 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 NF2-208ENST00000403435 2568 ntTSL 5 BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 AGGF1P2-201ENST00000426656 2106 ntBASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 KRT17P6-201ENST00000453795 1220 ntBASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 FAM86EP-206ENST00000510506 987 ntBASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
CCDC54Q8NEL0 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 PPIH-202ENST00000372549 327 ntTSL 3 BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 FXN-203ENST00000396366 922 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 AC114341.1-201ENST00000618070 349 ntBASIC14.86□□□□□ -0.03
CCDC54Q8NEL0 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms