Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
ZNF540Q8NDQ6 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ZNF540Q8NDQ6 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC15.83■□□□□ 0.12
ZNF540Q8NDQ6 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC15.83■□□□□ 0.12
ZNF540Q8NDQ6 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ZNF540Q8NDQ6 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ZNF540Q8NDQ6 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ZNF540Q8NDQ6 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
ZNF540Q8NDQ6 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.83■□□□□ 0.12
ZNF540Q8NDQ6 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
ZNF540Q8NDQ6 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
ZNF540Q8NDQ6 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC15.83■□□□□ 0.12
ZNF540Q8NDQ6 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
ZNF540Q8NDQ6 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
ZNF540Q8NDQ6 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC15.83■□□□□ 0.12
ZNF540Q8NDQ6 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC15.83■□□□□ 0.12
ZNF540Q8NDQ6 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.83■□□□□ 0.12
ZNF540Q8NDQ6 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ZNF540Q8NDQ6 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 AC092364.2-201ENST00000596710 2692 ntBASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 KRT18P56-201ENST00000507275 550 ntBASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 FGF14-AS2-201ENST00000606448 1074 ntBASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 AC069148.1-201ENST00000608741 768 ntBASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 AC116407.4-201ENST00000623319 1061 ntBASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 AC005332.1-201ENST00000577698 1310 ntBASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 FLJ16779-201ENST00000612722 7638 ntBASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.82■□□□□ 0.12
ZNF540Q8NDQ6 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ZNF540Q8NDQ6 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.81■□□□□ 0.12
ZNF540Q8NDQ6 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
ZNF540Q8NDQ6 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ZNF540Q8NDQ6 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
ZNF540Q8NDQ6 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ZNF540Q8NDQ6 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ZNF540Q8NDQ6 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
ZNF540Q8NDQ6 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC15.81■□□□□ 0.12
ZNF540Q8NDQ6 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
ZNF540Q8NDQ6 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC15.81■□□□□ 0.12
ZNF540Q8NDQ6 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
ZNF540Q8NDQ6 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ZNF540Q8NDQ6 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC15.81■□□□□ 0.12
ZNF540Q8NDQ6 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC15.81■□□□□ 0.12
ZNF540Q8NDQ6 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
ZNF540Q8NDQ6 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC15.81■□□□□ 0.12
ZNF540Q8NDQ6 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC15.81■□□□□ 0.12
ZNF540Q8NDQ6 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
ZNF540Q8NDQ6 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ZNF540Q8NDQ6 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
ZNF540Q8NDQ6 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ZNF540Q8NDQ6 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms