Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC21.01■□□□□ 0.95
SYNE4Q8N205 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SYNE4Q8N205 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
SYNE4Q8N205 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SYNE4Q8N205 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
SYNE4Q8N205 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SYNE4Q8N205 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SYNE4Q8N205 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC21.01■□□□□ 0.95
SYNE4Q8N205 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
SYNE4Q8N205 EDF1-203ENST00000371649 790 ntTSL 2 BASIC21.01■□□□□ 0.95
SYNE4Q8N205 TREML5P-201ENST00000421694 576 ntBASIC21.01■□□□□ 0.95
SYNE4Q8N205 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC21.01■□□□□ 0.95
SYNE4Q8N205 GATD1-206ENST00000526325 756 ntTSL 5 BASIC21.01■□□□□ 0.95
SYNE4Q8N205 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
SYNE4Q8N205 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC21.01■□□□□ 0.95
SYNE4Q8N205 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SYNE4Q8N205 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC21.01■□□□□ 0.95
SYNE4Q8N205 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
SYNE4Q8N205 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SYNE4Q8N205 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
SYNE4Q8N205 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SYNE4Q8N205 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC21.01■□□□□ 0.95
SYNE4Q8N205 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
SYNE4Q8N205 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC21■□□□□ 0.95
SYNE4Q8N205 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SYNE4Q8N205 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC21■□□□□ 0.95
SYNE4Q8N205 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC21■□□□□ 0.95
SYNE4Q8N205 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SYNE4Q8N205 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SYNE4Q8N205 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC21■□□□□ 0.95
SYNE4Q8N205 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
SYNE4Q8N205 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SYNE4Q8N205 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC21■□□□□ 0.95
SYNE4Q8N205 VMA21-202ENST00000370361 693 ntTSL 5 BASIC21■□□□□ 0.95
SYNE4Q8N205 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC21■□□□□ 0.95
SYNE4Q8N205 RAC2-204ENST00000406508 893 ntTSL 5 BASIC21■□□□□ 0.95
SYNE4Q8N205 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC21■□□□□ 0.95
SYNE4Q8N205 PPP6R2P1-201ENST00000450880 1275 ntBASIC21■□□□□ 0.95
SYNE4Q8N205 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC21■□□□□ 0.95
SYNE4Q8N205 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC21■□□□□ 0.95
SYNE4Q8N205 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC21■□□□□ 0.95
SYNE4Q8N205 KRT8P23-201ENST00000560090 1207 ntBASIC21■□□□□ 0.95
SYNE4Q8N205 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SYNE4Q8N205 CYP2A7P1-201ENST00000595391 815 ntBASIC21■□□□□ 0.95
SYNE4Q8N205 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SYNE4Q8N205 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
SYNE4Q8N205 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC21■□□□□ 0.95
SYNE4Q8N205 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
SYNE4Q8N205 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
SYNE4Q8N205 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC21■□□□□ 0.95
SYNE4Q8N205 NOC2LP2-201ENST00000407594 1944 ntBASIC21■□□□□ 0.95
SYNE4Q8N205 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SYNE4Q8N205 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SYNE4Q8N205 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SYNE4Q8N205 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.99■□□□□ 0.95
SYNE4Q8N205 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
SYNE4Q8N205 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC20.99■□□□□ 0.95
SYNE4Q8N205 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC20.99■□□□□ 0.95
SYNE4Q8N205 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SYNE4Q8N205 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC20.99■□□□□ 0.95
SYNE4Q8N205 KRT8P49-201ENST00000604166 1432 ntBASIC20.99■□□□□ 0.95
SYNE4Q8N205 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SYNE4Q8N205 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC20.99■□□□□ 0.95
SYNE4Q8N205 GAPDHP21-201ENST00000450301 1010 ntBASIC20.99■□□□□ 0.95
SYNE4Q8N205 AC125807.1-201ENST00000483097 614 ntBASIC20.99■□□□□ 0.95
SYNE4Q8N205 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
SYNE4Q8N205 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC20.99■□□□□ 0.95
SYNE4Q8N205 ALG1L8P-201ENST00000533887 760 ntBASIC20.99■□□□□ 0.95
SYNE4Q8N205 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC20.99■□□□□ 0.95
SYNE4Q8N205 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SYNE4Q8N205 AC140878.1-201ENST00000565277 250 ntBASIC20.99■□□□□ 0.95
SYNE4Q8N205 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC20.99■□□□□ 0.95
SYNE4Q8N205 AC008761.3-201ENST00000624803 892 ntBASIC20.99■□□□□ 0.95
SYNE4Q8N205 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SYNE4Q8N205 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
SYNE4Q8N205 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SYNE4Q8N205 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SYNE4Q8N205 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SYNE4Q8N205 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
SYNE4Q8N205 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC20.99■□□□□ 0.95
SYNE4Q8N205 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
SYNE4Q8N205 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC20.99■□□□□ 0.95
SYNE4Q8N205 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SYNE4Q8N205 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
SYNE4Q8N205 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
SYNE4Q8N205 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SYNE4Q8N205 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SYNE4Q8N205 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
SYNE4Q8N205 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
SYNE4Q8N205 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SYNE4Q8N205 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
SYNE4Q8N205 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SYNE4Q8N205 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SYNE4Q8N205 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC20.98■□□□□ 0.95
SYNE4Q8N205 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC20.98■□□□□ 0.95
SYNE4Q8N205 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SYNE4Q8N205 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SYNE4Q8N205 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
SYNE4Q8N205 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SYNE4Q8N205 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms