Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
CCDC60Q8IWA6 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC60Q8IWA6 RNU1-129P-201ENST00000384064 167 ntBASIC18.81■□□□□ 0.6
CCDC60Q8IWA6 METTL21AP1-201ENST00000438852 635 ntBASIC18.81■□□□□ 0.6
CCDC60Q8IWA6 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC60Q8IWA6 MTRF1LP2-201ENST00000506027 1122 ntBASIC18.81■□□□□ 0.6
CCDC60Q8IWA6 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC18.81■□□□□ 0.6
CCDC60Q8IWA6 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC60Q8IWA6 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC60Q8IWA6 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CCDC60Q8IWA6 U1.21-201ENST00000580816 167 ntBASIC18.81■□□□□ 0.6
CCDC60Q8IWA6 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC18.81■□□□□ 0.6
CCDC60Q8IWA6 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC60Q8IWA6 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CCDC60Q8IWA6 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
CCDC60Q8IWA6 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC60Q8IWA6 AC106820.2-201ENST00000563775 3264 ntBASIC18.81■□□□□ 0.6
CCDC60Q8IWA6 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC60Q8IWA6 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC60Q8IWA6 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC60Q8IWA6 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC18.81■□□□□ 0.6
CCDC60Q8IWA6 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 KRT18P28-201ENST00000453838 1332 ntBASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 AL671277.1-201ENST00000429656 993 ntBASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 KRT8P48-201ENST00000515599 1220 ntBASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 AC109635.5-201ENST00000533593 962 ntBASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 METTL23-205ENST00000588302 925 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 AL031055.1-201ENST00000606362 631 ntBASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC60Q8IWA6 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 AC090340.1-201ENST00000620778 4980 ntBASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 TIMM8BP1-201ENST00000452384 211 ntBASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 CYP2A7P1-201ENST00000595391 815 ntBASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 AC026120.1-201ENST00000611536 926 ntBASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC60Q8IWA6 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC60Q8IWA6 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms