Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
ATL3Q6DD88 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
ATL3Q6DD88 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.7
ATL3Q6DD88 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
ATL3Q6DD88 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
ATL3Q6DD88 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
ATL3Q6DD88 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
ATL3Q6DD88 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ATL3Q6DD88 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ATL3Q6DD88 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
ATL3Q6DD88 NUS1P2-201ENST00000417358 873 ntBASIC19.39■□□□□ 0.69
ATL3Q6DD88 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC19.39■□□□□ 0.69
ATL3Q6DD88 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
ATL3Q6DD88 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ATL3Q6DD88 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
ATL3Q6DD88 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ATL3Q6DD88 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
ATL3Q6DD88 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ATL3Q6DD88 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC19.39■□□□□ 0.69
ATL3Q6DD88 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
ATL3Q6DD88 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ATL3Q6DD88 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
ATL3Q6DD88 AC022188.1-201ENST00000620960 1664 ntBASIC19.39■□□□□ 0.69
ATL3Q6DD88 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ATL3Q6DD88 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ATL3Q6DD88 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ATL3Q6DD88 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ATL3Q6DD88 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
ATL3Q6DD88 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
ATL3Q6DD88 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
ATL3Q6DD88 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC19.38■□□□□ 0.69
ATL3Q6DD88 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ATL3Q6DD88 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ATL3Q6DD88 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
ATL3Q6DD88 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC19.38■□□□□ 0.69
ATL3Q6DD88 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC19.38■□□□□ 0.69
ATL3Q6DD88 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
ATL3Q6DD88 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
ATL3Q6DD88 RBM17P3-201ENST00000417687 1192 ntBASIC19.38■□□□□ 0.69
ATL3Q6DD88 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
ATL3Q6DD88 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
ATL3Q6DD88 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
ATL3Q6DD88 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC19.38■□□□□ 0.69
ATL3Q6DD88 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
ATL3Q6DD88 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
ATL3Q6DD88 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
ATL3Q6DD88 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC19.38■□□□□ 0.69
ATL3Q6DD88 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC19.38■□□□□ 0.69
ATL3Q6DD88 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
ATL3Q6DD88 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
ATL3Q6DD88 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
ATL3Q6DD88 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
ATL3Q6DD88 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
ATL3Q6DD88 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ATL3Q6DD88 IGHV3OR16-7-201ENST00000604106 360 ntBASIC19.38■□□□□ 0.69
ATL3Q6DD88 AP001269.4-201ENST00000609611 512 ntBASIC19.38■□□□□ 0.69
ATL3Q6DD88 AL589182.2-201ENST00000619332 1049 ntBASIC19.38■□□□□ 0.69
ATL3Q6DD88 AL139288.1-201ENST00000623748 933 ntBASIC19.38■□□□□ 0.69
ATL3Q6DD88 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC19.38■□□□□ 0.69
ATL3Q6DD88 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC19.38■□□□□ 0.69
ATL3Q6DD88 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
ATL3Q6DD88 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC19.38■□□□□ 0.69
ATL3Q6DD88 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
ATL3Q6DD88 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC19.37■□□□□ 0.69
ATL3Q6DD88 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
ATL3Q6DD88 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC19.37■□□□□ 0.69
ATL3Q6DD88 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ATL3Q6DD88 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ATL3Q6DD88 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC19.37■□□□□ 0.69
ATL3Q6DD88 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ATL3Q6DD88 ALOX12P2-203ENST00000570921 1945 ntBASIC19.37■□□□□ 0.69
ATL3Q6DD88 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ATL3Q6DD88 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC19.37■□□□□ 0.69
ATL3Q6DD88 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ATL3Q6DD88 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
ATL3Q6DD88 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC19.37■□□□□ 0.69
ATL3Q6DD88 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ATL3Q6DD88 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC19.37■□□□□ 0.69
ATL3Q6DD88 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ATL3Q6DD88 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ATL3Q6DD88 PCDH8P1-201ENST00000428983 2773 ntBASIC19.37■□□□□ 0.69
ATL3Q6DD88 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
ATL3Q6DD88 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ATL3Q6DD88 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
ATL3Q6DD88 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ATL3Q6DD88 AC132008.2-207ENST00000454517 770 ntBASIC19.37■□□□□ 0.69
ATL3Q6DD88 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC19.37■□□□□ 0.69
ATL3Q6DD88 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
ATL3Q6DD88 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ATL3Q6DD88 AC091076.1-201ENST00000610741 619 ntBASIC19.37■□□□□ 0.69
ATL3Q6DD88 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
ATL3Q6DD88 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC19.37■□□□□ 0.69
ATL3Q6DD88 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC19.37■□□□□ 0.69
ATL3Q6DD88 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
ATL3Q6DD88 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
ATL3Q6DD88 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
ATL3Q6DD88 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
ATL3Q6DD88 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC19.37■□□□□ 0.69
ATL3Q6DD88 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ATL3Q6DD88 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms