Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 GPS2P2-201ENST00000430745 888 ntBASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 MTRF1LP2-201ENST00000506027 1122 ntBASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 MPDU1-223ENST00000582151 728 ntBASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RNFT1Q5M7Z0 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 KRT18P32-201ENST00000424695 1287 ntBASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 TSFM-210ENST00000550559 897 ntTSL 5 BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 AC005498.2-205ENST00000593218 784 ntBASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 AL031055.1-201ENST00000606362 631 ntBASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 STX3-203ENST00000529177 1571 ntTSL 2 BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 AC131009.4-201ENST00000624048 1740 ntBASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RNFT1Q5M7Z0 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms