Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 TEX48-202ENST00000612244 662 ntTSL 3 BASIC17.72■□□□□ 0.43
CHD9Q3L8U1 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CHD9Q3L8U1 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.72■□□□□ 0.43
CHD9Q3L8U1 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CHD9Q3L8U1 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.72■□□□□ 0.43
CHD9Q3L8U1 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CHD9Q3L8U1 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHD9Q3L8U1 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHD9Q3L8U1 SLC9A3P2-201ENST00000447821 2021 ntBASIC17.72■□□□□ 0.43
CHD9Q3L8U1 AC018665.1-201ENST00000622927 1362 ntBASIC17.72■□□□□ 0.43
CHD9Q3L8U1 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHD9Q3L8U1 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CHD9Q3L8U1 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHD9Q3L8U1 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC17.72■□□□□ 0.43
CHD9Q3L8U1 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CHD9Q3L8U1 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHD9Q3L8U1 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CHD9Q3L8U1 DOC2GP-202ENST00000514950 1163 ntBASIC17.72■□□□□ 0.43
CHD9Q3L8U1 5S_rRNA.22-201ENST00000614916 106 ntBASIC17.72■□□□□ 0.43
CHD9Q3L8U1 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC17.72■□□□□ 0.43
CHD9Q3L8U1 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CHD9Q3L8U1 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.71■□□□□ 0.43
CHD9Q3L8U1 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CHD9Q3L8U1 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHD9Q3L8U1 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHD9Q3L8U1 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.71■□□□□ 0.43
CHD9Q3L8U1 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
CHD9Q3L8U1 AL353705.2-201ENST00000428243 662 ntBASIC17.71■□□□□ 0.43
CHD9Q3L8U1 HLA-DPB2-205ENST00000435074 1188 ntBASIC17.71■□□□□ 0.43
CHD9Q3L8U1 AC234783.1-201ENST00000441761 496 ntBASIC17.71■□□□□ 0.43
CHD9Q3L8U1 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC17.71■□□□□ 0.43
CHD9Q3L8U1 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHD9Q3L8U1 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHD9Q3L8U1 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
CHD9Q3L8U1 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CHD9Q3L8U1 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHD9Q3L8U1 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHD9Q3L8U1 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC17.71■□□□□ 0.43
CHD9Q3L8U1 ARL16-210ENST00000574938 751 ntTSL 2 BASIC17.71■□□□□ 0.43
CHD9Q3L8U1 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.71■□□□□ 0.43
CHD9Q3L8U1 AC138028.4-201ENST00000564984 1845 ntBASIC17.71■□□□□ 0.43
CHD9Q3L8U1 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHD9Q3L8U1 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHD9Q3L8U1 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CHD9Q3L8U1 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
CHD9Q3L8U1 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC17.71■□□□□ 0.42
CHD9Q3L8U1 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.7■□□□□ 0.42
CHD9Q3L8U1 AL671710.1-201ENST00000610245 2349 ntBASIC17.7■□□□□ 0.42
CHD9Q3L8U1 PDIA3P1-201ENST00000471856 1510 ntBASIC17.7■□□□□ 0.42
CHD9Q3L8U1 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHD9Q3L8U1 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.7■□□□□ 0.42
CHD9Q3L8U1 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CHD9Q3L8U1 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC17.7■□□□□ 0.42
CHD9Q3L8U1 AP005482.1-201ENST00000563722 1273 ntBASIC17.7■□□□□ 0.42
CHD9Q3L8U1 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC17.7■□□□□ 0.42
CHD9Q3L8U1 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC17.7■□□□□ 0.42
CHD9Q3L8U1 SRD5A3P1-201ENST00000603021 949 ntBASIC17.7■□□□□ 0.42
CHD9Q3L8U1 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CHD9Q3L8U1 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC17.7■□□□□ 0.42
CHD9Q3L8U1 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHD9Q3L8U1 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHD9Q3L8U1 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
CHD9Q3L8U1 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHD9Q3L8U1 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CHD9Q3L8U1 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CHD9Q3L8U1 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CHD9Q3L8U1 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHD9Q3L8U1 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC17.7■□□□□ 0.42
CHD9Q3L8U1 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC17.7■□□□□ 0.42
CHD9Q3L8U1 CYP2A7P1-201ENST00000595391 815 ntBASIC17.7■□□□□ 0.42
CHD9Q3L8U1 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CHD9Q3L8U1 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHD9Q3L8U1 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC17.7■□□□□ 0.42
CHD9Q3L8U1 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CHD9Q3L8U1 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CHD9Q3L8U1 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CHD9Q3L8U1 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.7■□□□□ 0.42
CHD9Q3L8U1 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.7■□□□□ 0.42
CHD9Q3L8U1 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CHD9Q3L8U1 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms