Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 AC104109.2-201ENST00000602919 1418 ntBASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 KRT18P58-201ENST00000527480 1120 ntBASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 AL589182.2-201ENST00000619332 1049 ntBASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 AL590787.1-201ENST00000568856 1315 ntBASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 ZNF259P1-201ENST00000407656 1365 ntBASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
PTCHD3Q3KNS1 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 LAGE3P1-201ENST00000425356 484 ntBASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 IGHV3-22-201ENST00000520721 359 ntBASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 AC105339.3-201ENST00000560043 636 ntBASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 PIN1-206ENST00000587625 878 ntTSL 2 BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
PTCHD3Q3KNS1 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 AL139424.1-201ENST00000607572 797 ntBASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD3Q3KNS1 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms