Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SF3A1Q15459 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC19.68■□□□□ 0.74
SF3A1Q15459 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC19.68■□□□□ 0.74
SF3A1Q15459 SPDYE21P-201ENST00000413323 827 ntBASIC19.68■□□□□ 0.74
SF3A1Q15459 AL020989.1-201ENST00000422979 469 ntBASIC19.68■□□□□ 0.74
SF3A1Q15459 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC19.68■□□□□ 0.74
SF3A1Q15459 SRP19-202ENST00000445150 833 ntTSL 2 BASIC19.68■□□□□ 0.74
SF3A1Q15459 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SF3A1Q15459 NT5C-211ENST00000582170 653 ntTSL 3 BASIC19.68■□□□□ 0.74
SF3A1Q15459 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC19.68■□□□□ 0.74
SF3A1Q15459 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SF3A1Q15459 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SF3A1Q15459 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC19.68■□□□□ 0.74
SF3A1Q15459 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SF3A1Q15459 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SF3A1Q15459 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SF3A1Q15459 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SF3A1Q15459 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SF3A1Q15459 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
SF3A1Q15459 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SF3A1Q15459 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
SF3A1Q15459 FRMD8P1-201ENST00000440433 1524 ntBASIC19.67■□□□□ 0.74
SF3A1Q15459 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SF3A1Q15459 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SF3A1Q15459 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC19.67■□□□□ 0.74
SF3A1Q15459 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SF3A1Q15459 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SF3A1Q15459 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SF3A1Q15459 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
SF3A1Q15459 SOD2-201ENST00000337404 991 ntTSL 2 BASIC19.67■□□□□ 0.74
SF3A1Q15459 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
SF3A1Q15459 ABCD1P5-201ENST00000445663 754 ntBASIC19.67■□□□□ 0.74
SF3A1Q15459 NUS1P1-201ENST00000446295 882 ntBASIC19.67■□□□□ 0.74
SF3A1Q15459 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC19.67■□□□□ 0.74
SF3A1Q15459 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC19.67■□□□□ 0.74
SF3A1Q15459 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SF3A1Q15459 FICD-205ENST00000552758 603 ntTSL 2 BASIC19.67■□□□□ 0.74
SF3A1Q15459 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC19.67■□□□□ 0.74
SF3A1Q15459 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC19.67■□□□□ 0.74
SF3A1Q15459 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
SF3A1Q15459 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SF3A1Q15459 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC19.66■□□□□ 0.74
SF3A1Q15459 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SF3A1Q15459 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
SF3A1Q15459 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC19.66■□□□□ 0.74
SF3A1Q15459 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SF3A1Q15459 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC19.66■□□□□ 0.74
SF3A1Q15459 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC19.66■□□□□ 0.74
SF3A1Q15459 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
SF3A1Q15459 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC19.66■□□□□ 0.74
SF3A1Q15459 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC19.66■□□□□ 0.74
SF3A1Q15459 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC19.66■□□□□ 0.74
SF3A1Q15459 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SF3A1Q15459 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SF3A1Q15459 MED16-201ENST00000269814 1199 ntTSL 5 BASIC19.66■□□□□ 0.74
SF3A1Q15459 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC19.66■□□□□ 0.74
SF3A1Q15459 RBSN-204ENST00000449050 903 ntTSL 2 BASIC19.66■□□□□ 0.74
SF3A1Q15459 SIGLEC30P-201ENST00000455569 941 ntBASIC19.66■□□□□ 0.74
SF3A1Q15459 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC19.66■□□□□ 0.74
SF3A1Q15459 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
SF3A1Q15459 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC19.66■□□□□ 0.74
SF3A1Q15459 AC138894.3-201ENST00000603787 634 ntBASIC19.66■□□□□ 0.74
SF3A1Q15459 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
SF3A1Q15459 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SF3A1Q15459 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SF3A1Q15459 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
SF3A1Q15459 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SF3A1Q15459 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SF3A1Q15459 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SF3A1Q15459 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC19.66■□□□□ 0.74
SF3A1Q15459 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SF3A1Q15459 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SF3A1Q15459 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SF3A1Q15459 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SF3A1Q15459 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC19.65■□□□□ 0.74
SF3A1Q15459 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SF3A1Q15459 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SF3A1Q15459 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
SF3A1Q15459 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SF3A1Q15459 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SF3A1Q15459 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SF3A1Q15459 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SF3A1Q15459 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
SF3A1Q15459 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC19.65■□□□□ 0.74
SF3A1Q15459 AC078925.2-201ENST00000624013 1973 ntBASIC19.65■□□□□ 0.74
SF3A1Q15459 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC19.65■□□□□ 0.74
SF3A1Q15459 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SF3A1Q15459 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SF3A1Q15459 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
SF3A1Q15459 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
SF3A1Q15459 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SF3A1Q15459 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SF3A1Q15459 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC19.65■□□□□ 0.74
SF3A1Q15459 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC19.65■□□□□ 0.74
SF3A1Q15459 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SF3A1Q15459 AC004817.3-201ENST00000602957 2129 ntBASIC19.65■□□□□ 0.74
SF3A1Q15459 AL591684.3-201ENST00000605187 298 ntBASIC19.65■□□□□ 0.74
SF3A1Q15459 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SF3A1Q15459 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SF3A1Q15459 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms