Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 BID-213ENST00000615414 2236 ntTSL 5 BASIC13.09□□□□□ -0.31
HIST1H1AQ02539 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
HIST1H1AQ02539 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HIST1H1AQ02539 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
HIST1H1AQ02539 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC13.09□□□□□ -0.31
HIST1H1AQ02539 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HIST1H1AQ02539 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC13.09□□□□□ -0.31
HIST1H1AQ02539 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC13.09□□□□□ -0.31
HIST1H1AQ02539 AC097374.2-201ENST00000618617 1306 ntBASIC13.09□□□□□ -0.31
HIST1H1AQ02539 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC13.09□□□□□ -0.31
HIST1H1AQ02539 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HIST1H1AQ02539 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HIST1H1AQ02539 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HIST1H1AQ02539 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
HIST1H1AQ02539 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HIST1H1AQ02539 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
HIST1H1AQ02539 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.31
HIST1H1AQ02539 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
HIST1H1AQ02539 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
HIST1H1AQ02539 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC13.08□□□□□ -0.31
HIST1H1AQ02539 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
HIST1H1AQ02539 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
HIST1H1AQ02539 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC13.08□□□□□ -0.31
HIST1H1AQ02539 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
HIST1H1AQ02539 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
HIST1H1AQ02539 AC106886.4-201ENST00000623557 2502 ntBASIC13.08□□□□□ -0.32
HIST1H1AQ02539 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 AC007967.3-201ENST00000434308 558 ntBASIC13.08□□□□□ -0.32
HIST1H1AQ02539 PON3-205ENST00000451904 1053 ntTSL 3 BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 VENTXP7-201ENST00000475503 772 ntBASIC13.08□□□□□ -0.32
HIST1H1AQ02539 KRT18P21-201ENST00000515767 1272 ntBASIC13.08□□□□□ -0.32
HIST1H1AQ02539 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 AC109462.3-201ENST00000573934 613 ntBASIC13.08□□□□□ -0.32
HIST1H1AQ02539 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
HIST1H1AQ02539 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 LTBR-211ENST00000543190 785 ntTSL 3 BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 AC111152.3-201ENST00000569699 673 ntBASIC13.07□□□□□ -0.32
HIST1H1AQ02539 TK1-204ENST00000590430 683 ntTSL 3 BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 VPS72-207ENST00000640458 689 ntTSL 5 BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HIST1H1AQ02539 AC116353.5-201ENST00000638148 1699 ntBASIC13.07□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms