Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC15.73■□□□□ 0.11
RNF4P78317 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
RNF4P78317 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC15.73■□□□□ 0.11
RNF4P78317 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.73■□□□□ 0.11
RNF4P78317 ACTL9-202ENST00000612068 1252 ntBASIC15.73■□□□□ 0.11
RNF4P78317 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
RNF4P78317 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
RNF4P78317 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RNF4P78317 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
RNF4P78317 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RNF4P78317 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RNF4P78317 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC15.73■□□□□ 0.11
RNF4P78317 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RNF4P78317 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
RNF4P78317 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC15.73■□□□□ 0.11
RNF4P78317 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RNF4P78317 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RNF4P78317 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RNF4P78317 AL021920.2-201ENST00000624828 1351 ntBASIC15.73■□□□□ 0.11
RNF4P78317 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RNF4P78317 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
RNF4P78317 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
RNF4P78317 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNF4P78317 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC15.72■□□□□ 0.11
RNF4P78317 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNF4P78317 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNF4P78317 PC-214ENST00000628663 1470 ntTSL 5 BASIC15.72■□□□□ 0.11
RNF4P78317 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNF4P78317 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
RNF4P78317 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNF4P78317 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
RNF4P78317 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNF4P78317 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNF4P78317 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
RNF4P78317 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC15.72■□□□□ 0.11
RNF4P78317 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNF4P78317 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC15.72■□□□□ 0.11
RNF4P78317 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
RNF4P78317 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
RNF4P78317 AC023274.1-201ENST00000418278 595 ntBASIC15.72■□□□□ 0.11
RNF4P78317 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC15.72■□□□□ 0.11
RNF4P78317 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC15.72■□□□□ 0.11
RNF4P78317 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
RNF4P78317 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC15.72■□□□□ 0.11
RNF4P78317 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC15.72■□□□□ 0.11
RNF4P78317 DUX4L17-201ENST00000557360 1267 ntBASIC15.72■□□□□ 0.11
RNF4P78317 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNF4P78317 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC15.72■□□□□ 0.11
RNF4P78317 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
RNF4P78317 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC15.72■□□□□ 0.11
RNF4P78317 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNF4P78317 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC15.72■□□□□ 0.11
RNF4P78317 AQP6-205ENST00000618286 829 ntTSL 5 BASIC15.72■□□□□ 0.11
RNF4P78317 AC007064.4-201ENST00000637740 555 ntBASIC15.72■□□□□ 0.11
RNF4P78317 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNF4P78317 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
RNF4P78317 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNF4P78317 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC15.72■□□□□ 0.11
RNF4P78317 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC15.72■□□□□ 0.11
RNF4P78317 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNF4P78317 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNF4P78317 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC15.72■□□□□ 0.11
RNF4P78317 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
RNF4P78317 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
RNF4P78317 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC15.72■□□□□ 0.11
RNF4P78317 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNF4P78317 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC15.72■□□□□ 0.11
RNF4P78317 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNF4P78317 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC15.71■□□□□ 0.11
RNF4P78317 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC15.71■□□□□ 0.11
RNF4P78317 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
RNF4P78317 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
RNF4P78317 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RNF4P78317 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC15.71■□□□□ 0.11
RNF4P78317 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC15.71■□□□□ 0.11
RNF4P78317 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
RNF4P78317 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC15.71■□□□□ 0.11
RNF4P78317 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RNF4P78317 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
RNF4P78317 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
RNF4P78317 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RNF4P78317 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
RNF4P78317 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RNF4P78317 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
RNF4P78317 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
RNF4P78317 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC15.71■□□□□ 0.11
RNF4P78317 AL513480.1-201ENST00000451731 511 ntBASIC15.71■□□□□ 0.11
RNF4P78317 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
RNF4P78317 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC15.71■□□□□ 0.11
RNF4P78317 AC023141.13-201ENST00000604991 943 ntBASIC15.71■□□□□ 0.11
RNF4P78317 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC15.71■□□□□ 0.11
RNF4P78317 AC004877.2-201ENST00000623941 599 ntBASIC15.71■□□□□ 0.11
RNF4P78317 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC15.71■□□□□ 0.11
RNF4P78317 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
RNF4P78317 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
RNF4P78317 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
RNF4P78317 TOP3BP1-201ENST00000420768 1380 ntBASIC15.71■□□□□ 0.11
RNF4P78317 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
RNF4P78317 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
RNF4P78317 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms