Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC15.22■□□□□ 0.03
CLRN1P58418 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN1P58418 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN1P58418 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN1P58418 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
CLRN1P58418 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN1P58418 AC011676.5-201ENST00000624864 2660 ntBASIC15.21■□□□□ 0.03
CLRN1P58418 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN1P58418 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN1P58418 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN1P58418 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC15.21■□□□□ 0.03
CLRN1P58418 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
CLRN1P58418 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN1P58418 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN1P58418 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN1P58418 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN1P58418 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC15.21■□□□□ 0.03
CLRN1P58418 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
CLRN1P58418 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN1P58418 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN1P58418 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN1P58418 AKR1C7P-201ENST00000305623 895 ntBASIC15.21■□□□□ 0.03
CLRN1P58418 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC15.21■□□□□ 0.03
CLRN1P58418 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC15.21■□□□□ 0.03
CLRN1P58418 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC15.21■□□□□ 0.03
CLRN1P58418 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC15.21■□□□□ 0.03
CLRN1P58418 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC15.21■□□□□ 0.03
CLRN1P58418 AC139887.3-201ENST00000568585 713 ntBASIC15.21■□□□□ 0.03
CLRN1P58418 TBCB-205ENST00000585746 875 ntTSL 3 BASIC15.21■□□□□ 0.03
CLRN1P58418 AL353135.1-201ENST00000606729 504 ntBASIC15.21■□□□□ 0.03
CLRN1P58418 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CLRN1P58418 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN1P58418 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN1P58418 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC15.21■□□□□ 0.03
CLRN1P58418 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN1P58418 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN1P58418 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLRN1P58418 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
CLRN1P58418 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC15.21■□□□□ 0.02
CLRN1P58418 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
CLRN1P58418 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
CLRN1P58418 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC15.2■□□□□ 0.02
CLRN1P58418 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC15.2■□□□□ 0.02
CLRN1P58418 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN1P58418 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN1P58418 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN1P58418 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC15.2■□□□□ 0.02
CLRN1P58418 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC15.2■□□□□ 0.02
CLRN1P58418 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC15.2■□□□□ 0.02
CLRN1P58418 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CLRN1P58418 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN1P58418 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN1P58418 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN1P58418 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC15.2■□□□□ 0.02
CLRN1P58418 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC15.2■□□□□ 0.02
CLRN1P58418 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN1P58418 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC15.2■□□□□ 0.02
CLRN1P58418 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC15.2■□□□□ 0.02
CLRN1P58418 RNF151-202ENST00000569210 853 ntTSL 2 BASIC15.2■□□□□ 0.02
CLRN1P58418 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC15.2■□□□□ 0.02
CLRN1P58418 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN1P58418 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC15.2■□□□□ 0.02
CLRN1P58418 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
CLRN1P58418 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN1P58418 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN1P58418 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN1P58418 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC15.2■□□□□ 0.02
CLRN1P58418 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN1P58418 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN1P58418 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CLRN1P58418 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN1P58418 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN1P58418 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.2■□□□□ 0.02
CLRN1P58418 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
CLRN1P58418 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN1P58418 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN1P58418 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN1P58418 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN1P58418 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN1P58418 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN1P58418 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CLRN1P58418 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.2■□□□□ 0.02
CLRN1P58418 TUBB8P12-201ENST00000308911 1335 ntBASIC15.19■□□□□ 0.02
CLRN1P58418 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN1P58418 TUBB7P-202ENST00000428444 1305 ntBASIC15.19■□□□□ 0.02
CLRN1P58418 TUBB8P7-204ENST00000567960 1332 ntBASIC15.19■□□□□ 0.02
CLRN1P58418 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN1P58418 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.19■□□□□ 0.02
CLRN1P58418 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
CLRN1P58418 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
CLRN1P58418 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN1P58418 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN1P58418 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN1P58418 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN1P58418 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN1P58418 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN1P58418 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC15.19■□□□□ 0.02
CLRN1P58418 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN1P58418 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CLRN1P58418 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 8.4 ms