Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
NEK3P51956 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
NEK3P51956 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.57■□□□□ 0.4
NEK3P51956 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NEK3P51956 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NEK3P51956 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NEK3P51956 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
NEK3P51956 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NEK3P51956 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
NEK3P51956 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NEK3P51956 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
NEK3P51956 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.57■□□□□ 0.4
NEK3P51956 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NEK3P51956 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
NEK3P51956 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
NEK3P51956 AC046185.3-201ENST00000623228 1824 ntBASIC17.56■□□□□ 0.4
NEK3P51956 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.56■□□□□ 0.4
NEK3P51956 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
NEK3P51956 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
NEK3P51956 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
NEK3P51956 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
NEK3P51956 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
NEK3P51956 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NEK3P51956 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
NEK3P51956 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
NEK3P51956 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NEK3P51956 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
NEK3P51956 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.56■□□□□ 0.4
NEK3P51956 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
NEK3P51956 PMS2P1-201ENST00000431037 1228 ntBASIC17.56■□□□□ 0.4
NEK3P51956 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.56■□□□□ 0.4
NEK3P51956 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC17.56■□□□□ 0.4
NEK3P51956 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.56■□□□□ 0.4
NEK3P51956 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
NEK3P51956 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC17.56■□□□□ 0.4
NEK3P51956 IGHV3-22-201ENST00000520721 359 ntBASIC17.56■□□□□ 0.4
NEK3P51956 AC106730.1-201ENST00000566722 1090 ntBASIC17.56■□□□□ 0.4
NEK3P51956 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.56■□□□□ 0.4
NEK3P51956 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.56■□□□□ 0.4
NEK3P51956 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.56■□□□□ 0.4
NEK3P51956 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
NEK3P51956 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
NEK3P51956 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NEK3P51956 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.56■□□□□ 0.4
NEK3P51956 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.56■□□□□ 0.4
NEK3P51956 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
NEK3P51956 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
NEK3P51956 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NEK3P51956 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
NEK3P51956 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
NEK3P51956 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
NEK3P51956 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NEK3P51956 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.56■□□□□ 0.4
NEK3P51956 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
NEK3P51956 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.56■□□□□ 0.4
NEK3P51956 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NEK3P51956 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NEK3P51956 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
NEK3P51956 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.55■□□□□ 0.4
NEK3P51956 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
NEK3P51956 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEK3P51956 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.55■□□□□ 0.4
NEK3P51956 ZNF259P1-201ENST00000407656 1365 ntBASIC17.55■□□□□ 0.4
NEK3P51956 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEK3P51956 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEK3P51956 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEK3P51956 AC009336.1-201ENST00000608941 1553 ntBASIC17.55■□□□□ 0.4
NEK3P51956 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.55■□□□□ 0.4
NEK3P51956 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.55■□□□□ 0.4
NEK3P51956 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
NEK3P51956 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.55■□□□□ 0.4
NEK3P51956 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEK3P51956 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEK3P51956 RPL18-209ENST00000550645 463 ntTSL 5 BASIC17.55■□□□□ 0.4
NEK3P51956 RPL18-214ENST00000552588 559 ntTSL 3 BASIC17.55■□□□□ 0.4
NEK3P51956 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.55■□□□□ 0.4
NEK3P51956 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.55■□□□□ 0.4
NEK3P51956 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.55■□□□□ 0.4
NEK3P51956 MIR1199-201ENST00000621445 119 ntBASIC17.55■□□□□ 0.4
NEK3P51956 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
NEK3P51956 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEK3P51956 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEK3P51956 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.55■□□□□ 0.4
NEK3P51956 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
NEK3P51956 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEK3P51956 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
NEK3P51956 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.55■□□□□ 0.4
NEK3P51956 AP002414.3-201ENST00000589352 1468 ntBASIC17.55■□□□□ 0.4
NEK3P51956 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
NEK3P51956 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.55■□□□□ 0.4
NEK3P51956 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.55■□□□□ 0.4
NEK3P51956 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
NEK3P51956 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEK3P51956 NCF1C-201ENST00000438382 1427 ntBASIC17.55■□□□□ 0.4
NEK3P51956 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
NEK3P51956 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.55■□□□□ 0.4
NEK3P51956 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.55■□□□□ 0.4
NEK3P51956 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
NEK3P51956 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NEK3P51956 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms