Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PDGFRAP16234 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PDGFRAP16234 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.86■□□□□ 0.45
PDGFRAP16234 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.86■□□□□ 0.45
PDGFRAP16234 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
PDGFRAP16234 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.85■□□□□ 0.45
PDGFRAP16234 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PDGFRAP16234 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PDGFRAP16234 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PDGFRAP16234 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.85■□□□□ 0.45
PDGFRAP16234 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.85■□□□□ 0.45
PDGFRAP16234 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PDGFRAP16234 AC073621.1-201ENST00000392730 636 ntBASIC17.85■□□□□ 0.45
PDGFRAP16234 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
PDGFRAP16234 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PDGFRAP16234 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.85■□□□□ 0.45
PDGFRAP16234 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.85■□□□□ 0.45
PDGFRAP16234 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.85■□□□□ 0.45
PDGFRAP16234 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
PDGFRAP16234 AC092910.1-201ENST00000482027 1129 ntBASIC17.85■□□□□ 0.45
PDGFRAP16234 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.85■□□□□ 0.45
PDGFRAP16234 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PDGFRAP16234 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
PDGFRAP16234 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PDGFRAP16234 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
PDGFRAP16234 DUX4L17-201ENST00000557360 1267 ntBASIC17.85■□□□□ 0.45
PDGFRAP16234 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.85■□□□□ 0.45
PDGFRAP16234 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC17.85■□□□□ 0.45
PDGFRAP16234 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.85■□□□□ 0.45
PDGFRAP16234 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PDGFRAP16234 PI4KAP1-204ENST00000612579 1703 ntBASIC17.85■□□□□ 0.45
PDGFRAP16234 AL805961.1-202ENST00000641562 540 ntBASIC17.85■□□□□ 0.45
PDGFRAP16234 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
PDGFRAP16234 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.85■□□□□ 0.45
PDGFRAP16234 PCDHB17P-201ENST00000539533 2393 ntBASIC17.84■□□□□ 0.45
PDGFRAP16234 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PDGFRAP16234 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.84■□□□□ 0.45
PDGFRAP16234 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PDGFRAP16234 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PDGFRAP16234 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PDGFRAP16234 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PDGFRAP16234 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PDGFRAP16234 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.84■□□□□ 0.45
PDGFRAP16234 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
PDGFRAP16234 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.84■□□□□ 0.45
PDGFRAP16234 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
PDGFRAP16234 AP002414.3-201ENST00000589352 1468 ntBASIC17.84■□□□□ 0.45
PDGFRAP16234 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.84■□□□□ 0.45
PDGFRAP16234 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PDGFRAP16234 TUBB8P12-201ENST00000308911 1335 ntBASIC17.84■□□□□ 0.45
PDGFRAP16234 TUBB7P-202ENST00000428444 1305 ntBASIC17.84■□□□□ 0.45
PDGFRAP16234 TUBB8P7-204ENST00000567960 1332 ntBASIC17.84■□□□□ 0.45
PDGFRAP16234 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.84■□□□□ 0.45
PDGFRAP16234 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
PDGFRAP16234 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.84■□□□□ 0.45
PDGFRAP16234 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.84■□□□□ 0.45
PDGFRAP16234 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.84■□□□□ 0.45
PDGFRAP16234 PAWRP1-201ENST00000451083 565 ntBASIC17.84■□□□□ 0.45
PDGFRAP16234 AC136632.2-201ENST00000512891 861 ntBASIC17.84■□□□□ 0.45
PDGFRAP16234 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.84■□□□□ 0.45
PDGFRAP16234 SLC25A1P1-201ENST00000528351 927 ntBASIC17.84■□□□□ 0.45
PDGFRAP16234 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.84■□□□□ 0.45
PDGFRAP16234 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.84■□□□□ 0.45
PDGFRAP16234 AC105339.3-201ENST00000560043 636 ntBASIC17.84■□□□□ 0.45
PDGFRAP16234 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
PDGFRAP16234 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.84■□□□□ 0.45
PDGFRAP16234 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PDGFRAP16234 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
PDGFRAP16234 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PDGFRAP16234 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PDGFRAP16234 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PDGFRAP16234 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PDGFRAP16234 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
PDGFRAP16234 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
PDGFRAP16234 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.83■□□□□ 0.45
PDGFRAP16234 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
PDGFRAP16234 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
PDGFRAP16234 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
PDGFRAP16234 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.83■□□□□ 0.45
PDGFRAP16234 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
PDGFRAP16234 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.45
PDGFRAP16234 AL021920.2-201ENST00000624828 1351 ntBASIC17.83■□□□□ 0.45
PDGFRAP16234 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.83■□□□□ 0.44
PDGFRAP16234 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
PDGFRAP16234 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC17.83■□□□□ 0.44
PDGFRAP16234 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC17.83■□□□□ 0.44
PDGFRAP16234 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PDGFRAP16234 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
PDGFRAP16234 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.83■□□□□ 0.44
PDGFRAP16234 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
PDGFRAP16234 AF228730.7-201ENST00000641842 219 ntBASIC17.83■□□□□ 0.44
PDGFRAP16234 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PDGFRAP16234 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
PDGFRAP16234 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
PDGFRAP16234 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.83■□□□□ 0.44
PDGFRAP16234 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
PDGFRAP16234 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
PDGFRAP16234 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.44
PDGFRAP16234 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PDGFRAP16234 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms