Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VIMP08670 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
VIMP08670 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VIMP08670 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VIMP08670 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.14■□□□□ 0.33
VIMP08670 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.14■□□□□ 0.33
VIMP08670 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
VIMP08670 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.14■□□□□ 0.33
VIMP08670 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VIMP08670 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
VIMP08670 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC17.14■□□□□ 0.33
VIMP08670 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VIMP08670 MIR3917-201ENST00000580971 93 ntBASIC17.14■□□□□ 0.33
VIMP08670 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VIMP08670 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VIMP08670 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VIMP08670 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.14■□□□□ 0.33
VIMP08670 BLK-205ENST00000529894 2017 ntTSL 5 BASIC17.14■□□□□ 0.33
VIMP08670 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
VIMP08670 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VIMP08670 MTHFR-217ENST00000641820 1569 ntBASIC17.14■□□□□ 0.33
VIMP08670 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VIMP08670 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC17.14■□□□□ 0.33
VIMP08670 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
VIMP08670 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VIMP08670 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
VIMP08670 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.14■□□□□ 0.33
VIMP08670 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VIMP08670 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VIMP08670 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VIMP08670 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VIMP08670 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VIMP08670 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VIMP08670 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VIMP08670 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VIMP08670 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VIMP08670 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VIMP08670 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VIMP08670 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VIMP08670 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VIMP08670 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.13■□□□□ 0.33
VIMP08670 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VIMP08670 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC17.13■□□□□ 0.33
VIMP08670 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
VIMP08670 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VIMP08670 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC17.13■□□□□ 0.33
VIMP08670 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.13■□□□□ 0.33
VIMP08670 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VIMP08670 AC092865.7-201ENST00000641832 219 ntBASIC17.13■□□□□ 0.33
VIMP08670 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VIMP08670 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VIMP08670 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
VIMP08670 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VIMP08670 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VIMP08670 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC17.13■□□□□ 0.33
VIMP08670 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
VIMP08670 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
VIMP08670 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VIMP08670 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VIMP08670 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VIMP08670 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
VIMP08670 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VIMP08670 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VIMP08670 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VIMP08670 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VIMP08670 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VIMP08670 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
VIMP08670 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.12■□□□□ 0.33
VIMP08670 EGFEM1P-202ENST00000431685 1563 ntBASIC17.12■□□□□ 0.33
VIMP08670 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VIMP08670 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VIMP08670 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
VIMP08670 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VIMP08670 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
VIMP08670 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VIMP08670 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VIMP08670 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
VIMP08670 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.12■□□□□ 0.33
VIMP08670 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.12■□□□□ 0.33
VIMP08670 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC17.12■□□□□ 0.33
VIMP08670 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VIMP08670 MMD2-204ENST00000612910 778 ntTSL 5 BASIC17.12■□□□□ 0.33
VIMP08670 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
VIMP08670 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VIMP08670 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.12■□□□□ 0.33
VIMP08670 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VIMP08670 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC17.12■□□□□ 0.33
VIMP08670 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC17.12■□□□□ 0.33
VIMP08670 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VIMP08670 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
VIMP08670 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VIMP08670 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
VIMP08670 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VIMP08670 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.12■□□□□ 0.33
VIMP08670 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC17.12■□□□□ 0.33
VIMP08670 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VIMP08670 AC092338.2-201ENST00000568827 1415 ntBASIC17.12■□□□□ 0.33
VIMP08670 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC17.12■□□□□ 0.33
VIMP08670 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VIMP08670 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms