Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 TMPOP1-202ENST00000424642 1267 ntBASIC16.12■□□□□ 0.17
CLPTM1O96005 ELP6-205ENST00000439305 880 ntTSL 2 BASIC16.12■□□□□ 0.17
CLPTM1O96005 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CLPTM1O96005 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CLPTM1O96005 AC092865.7-201ENST00000641832 219 ntBASIC16.12■□□□□ 0.17
CLPTM1O96005 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLPTM1O96005 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CLPTM1O96005 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.12■□□□□ 0.17
CLPTM1O96005 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
CLPTM1O96005 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.12■□□□□ 0.17
CLPTM1O96005 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLPTM1O96005 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLPTM1O96005 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CLPTM1O96005 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.11■□□□□ 0.17
CLPTM1O96005 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLPTM1O96005 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC16.11■□□□□ 0.17
CLPTM1O96005 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLPTM1O96005 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLPTM1O96005 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLPTM1O96005 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.11■□□□□ 0.17
CLPTM1O96005 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CLPTM1O96005 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLPTM1O96005 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLPTM1O96005 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLPTM1O96005 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLPTM1O96005 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC16.11■□□□□ 0.17
CLPTM1O96005 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
CLPTM1O96005 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLPTM1O96005 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC16.11■□□□□ 0.17
CLPTM1O96005 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC16.11■□□□□ 0.17
CLPTM1O96005 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.11■□□□□ 0.17
CLPTM1O96005 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC16.11■□□□□ 0.17
CLPTM1O96005 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC16.11■□□□□ 0.17
CLPTM1O96005 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC16.11■□□□□ 0.17
CLPTM1O96005 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLPTM1O96005 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CLPTM1O96005 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLPTM1O96005 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLPTM1O96005 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLPTM1O96005 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.11■□□□□ 0.17
CLPTM1O96005 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLPTM1O96005 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLPTM1O96005 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLPTM1O96005 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLPTM1O96005 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.11■□□□□ 0.17
CLPTM1O96005 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLPTM1O96005 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLPTM1O96005 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC16.11■□□□□ 0.17
CLPTM1O96005 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLPTM1O96005 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC16.1■□□□□ 0.17
CLPTM1O96005 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLPTM1O96005 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC16.1■□□□□ 0.17
CLPTM1O96005 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.1■□□□□ 0.17
CLPTM1O96005 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC16.1■□□□□ 0.17
CLPTM1O96005 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLPTM1O96005 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
CLPTM1O96005 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
CLPTM1O96005 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLPTM1O96005 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLPTM1O96005 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLPTM1O96005 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLPTM1O96005 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
CLPTM1O96005 CD70-202ENST00000423145 881 ntTSL 2 BASIC16.1■□□□□ 0.17
CLPTM1O96005 MCCD1P1-208ENST00000445732 328 ntBASIC16.1■□□□□ 0.17
CLPTM1O96005 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CLPTM1O96005 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC16.1■□□□□ 0.17
CLPTM1O96005 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC16.1■□□□□ 0.17
CLPTM1O96005 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC16.1■□□□□ 0.17
CLPTM1O96005 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC16.1■□□□□ 0.17
CLPTM1O96005 AL138966.2-201ENST00000621997 464 ntBASIC16.1■□□□□ 0.17
CLPTM1O96005 CR769767.2-201ENST00000622735 460 ntBASIC16.1■□□□□ 0.17
CLPTM1O96005 AC132938.6-201ENST00000623828 1655 ntBASIC16.1■□□□□ 0.17
CLPTM1O96005 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC16.1■□□□□ 0.17
CLPTM1O96005 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CLPTM1O96005 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CLPTM1O96005 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLPTM1O96005 AP002414.2-201ENST00000591780 3365 ntBASIC16.1■□□□□ 0.17
CLPTM1O96005 AC009949.1-201ENST00000623048 1830 ntBASIC16.1■□□□□ 0.17
CLPTM1O96005 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.1■□□□□ 0.17
CLPTM1O96005 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLPTM1O96005 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CLPTM1O96005 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.1■□□□□ 0.17
CLPTM1O96005 LGALS8-AS1-201ENST00000487567 1457 ntBASIC16.1■□□□□ 0.17
CLPTM1O96005 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CLPTM1O96005 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLPTM1O96005 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
CLPTM1O96005 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLPTM1O96005 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLPTM1O96005 AC036111.1-201ENST00000533973 1582 ntBASIC16.09■□□□□ 0.17
CLPTM1O96005 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.09■□□□□ 0.17
CLPTM1O96005 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CLPTM1O96005 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLPTM1O96005 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLPTM1O96005 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLPTM1O96005 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLPTM1O96005 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLPTM1O96005 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLPTM1O96005 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CLPTM1O96005 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLPTM1O96005 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 62.8 ms