Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SEMA3DO95025 AC139887.3-201ENST00000568585 713 ntBASIC16.33■□□□□ 0.2
SEMA3DO95025 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.33■□□□□ 0.2
SEMA3DO95025 IFNL4P1-201ENST00000607083 540 ntBASIC16.33■□□□□ 0.2
SEMA3DO95025 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
SEMA3DO95025 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.33■□□□□ 0.2
SEMA3DO95025 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.33■□□□□ 0.2
SEMA3DO95025 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
SEMA3DO95025 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.33■□□□□ 0.2
SEMA3DO95025 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SEMA3DO95025 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SEMA3DO95025 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SEMA3DO95025 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
SEMA3DO95025 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SEMA3DO95025 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.33■□□□□ 0.2
SEMA3DO95025 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SEMA3DO95025 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SEMA3DO95025 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SEMA3DO95025 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
SEMA3DO95025 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.32■□□□□ 0.2
SEMA3DO95025 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SEMA3DO95025 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SEMA3DO95025 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SEMA3DO95025 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SEMA3DO95025 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SEMA3DO95025 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SEMA3DO95025 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SEMA3DO95025 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SEMA3DO95025 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SEMA3DO95025 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SEMA3DO95025 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SEMA3DO95025 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SEMA3DO95025 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SEMA3DO95025 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.32■□□□□ 0.2
SEMA3DO95025 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.32■□□□□ 0.2
SEMA3DO95025 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SEMA3DO95025 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SEMA3DO95025 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
SEMA3DO95025 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SEMA3DO95025 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.32■□□□□ 0.2
SEMA3DO95025 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.32■□□□□ 0.2
SEMA3DO95025 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
SEMA3DO95025 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.32■□□□□ 0.2
SEMA3DO95025 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.32■□□□□ 0.2
SEMA3DO95025 AC092068.3-201ENST00000587894 2016 ntBASIC16.32■□□□□ 0.2
SEMA3DO95025 AC064862.7-201ENST00000604520 867 ntBASIC16.32■□□□□ 0.2
SEMA3DO95025 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.32■□□□□ 0.2
SEMA3DO95025 AC012313.10-201ENST00000623509 926 ntBASIC16.32■□□□□ 0.2
SEMA3DO95025 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
SEMA3DO95025 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SEMA3DO95025 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
SEMA3DO95025 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
SEMA3DO95025 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SEMA3DO95025 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
SEMA3DO95025 AC005915.1-201ENST00000624912 2018 ntBASIC16.31■□□□□ 0.2
SEMA3DO95025 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SEMA3DO95025 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SEMA3DO95025 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SEMA3DO95025 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
SEMA3DO95025 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.31■□□□□ 0.2
SEMA3DO95025 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
SEMA3DO95025 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
SEMA3DO95025 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.31■□□□□ 0.2
SEMA3DO95025 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SEMA3DO95025 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SEMA3DO95025 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SEMA3DO95025 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.31■□□□□ 0.2
SEMA3DO95025 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
SEMA3DO95025 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SEMA3DO95025 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SEMA3DO95025 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SEMA3DO95025 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.31■□□□□ 0.2
SEMA3DO95025 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.31■□□□□ 0.2
SEMA3DO95025 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
SEMA3DO95025 AP002490.2-201ENST00000524791 560 ntBASIC16.31■□□□□ 0.2
SEMA3DO95025 AF238378.1-201ENST00000526806 358 ntBASIC16.31■□□□□ 0.2
SEMA3DO95025 DUX4L17-201ENST00000557360 1267 ntBASIC16.31■□□□□ 0.2
SEMA3DO95025 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.31■□□□□ 0.2
SEMA3DO95025 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC16.31■□□□□ 0.2
SEMA3DO95025 MTDHP4-201ENST00000600287 670 ntBASIC16.31■□□□□ 0.2
SEMA3DO95025 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
SEMA3DO95025 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.31■□□□□ 0.2
SEMA3DO95025 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SEMA3DO95025 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SEMA3DO95025 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SEMA3DO95025 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SEMA3DO95025 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SEMA3DO95025 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SEMA3DO95025 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SEMA3DO95025 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SEMA3DO95025 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
SEMA3DO95025 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SEMA3DO95025 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
SEMA3DO95025 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SEMA3DO95025 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SEMA3DO95025 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.3■□□□□ 0.2
SEMA3DO95025 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SEMA3DO95025 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.3■□□□□ 0.2
SEMA3DO95025 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.3■□□□□ 0.2
SEMA3DO95025 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms