Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.03■□□□□ 0.32
SHOX2O60902 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.03■□□□□ 0.32
SHOX2O60902 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
SHOX2O60902 DGCR10-201ENST00000609839 495 ntBASIC17.03■□□□□ 0.32
SHOX2O60902 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
SHOX2O60902 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHOX2O60902 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHOX2O60902 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
SHOX2O60902 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.03■□□□□ 0.32
SHOX2O60902 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHOX2O60902 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC17.03■□□□□ 0.32
SHOX2O60902 LINC02447-202ENST00000501888 2146 ntBASIC17.03■□□□□ 0.32
SHOX2O60902 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHOX2O60902 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHOX2O60902 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
SHOX2O60902 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHOX2O60902 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SHOX2O60902 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SHOX2O60902 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHOX2O60902 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SHOX2O60902 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHOX2O60902 GSN-203ENST00000373808 2664 ntTSL 2 BASIC17.03■□□□□ 0.32
SHOX2O60902 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
SHOX2O60902 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SHOX2O60902 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC17.02■□□□□ 0.32
SHOX2O60902 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.02■□□□□ 0.32
SHOX2O60902 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SHOX2O60902 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SHOX2O60902 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SHOX2O60902 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SHOX2O60902 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SHOX2O60902 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC17.02■□□□□ 0.32
SHOX2O60902 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SHOX2O60902 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
SHOX2O60902 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SHOX2O60902 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC17.02■□□□□ 0.32
SHOX2O60902 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
SHOX2O60902 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
SHOX2O60902 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SHOX2O60902 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SHOX2O60902 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
SHOX2O60902 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
SHOX2O60902 SAPCD2P4-201ENST00000424595 1171 ntBASIC17.02■□□□□ 0.32
SHOX2O60902 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
SHOX2O60902 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.02■□□□□ 0.32
SHOX2O60902 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC17.02■□□□□ 0.32
SHOX2O60902 SLC25A1P4-201ENST00000567977 778 ntBASIC17.02■□□□□ 0.32
SHOX2O60902 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC17.02■□□□□ 0.32
SHOX2O60902 AL359736.2-201ENST00000621992 437 ntBASIC17.02■□□□□ 0.32
SHOX2O60902 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC17.02■□□□□ 0.32
SHOX2O60902 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC17.02■□□□□ 0.32
SHOX2O60902 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC17.02■□□□□ 0.32
SHOX2O60902 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
SHOX2O60902 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC17.02■□□□□ 0.32
SHOX2O60902 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
SHOX2O60902 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC17.02■□□□□ 0.31
SHOX2O60902 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.31
SHOX2O60902 AL109954.1-202ENST00000564051 2148 ntBASIC17.02■□□□□ 0.31
SHOX2O60902 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
SHOX2O60902 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SHOX2O60902 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
SHOX2O60902 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC17.01■□□□□ 0.31
SHOX2O60902 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
SHOX2O60902 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
SHOX2O60902 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHOX2O60902 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
SHOX2O60902 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHOX2O60902 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC17.01■□□□□ 0.31
SHOX2O60902 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SHOX2O60902 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHOX2O60902 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHOX2O60902 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
SHOX2O60902 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.01■□□□□ 0.31
SHOX2O60902 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC17.01■□□□□ 0.31
SHOX2O60902 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SHOX2O60902 PVRIG2P-201ENST00000435460 978 ntBASIC17.01■□□□□ 0.31
SHOX2O60902 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC17.01■□□□□ 0.31
SHOX2O60902 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
SHOX2O60902 AP003041.3-201ENST00000527151 707 ntBASIC17.01■□□□□ 0.31
SHOX2O60902 CD177P1-201ENST00000606252 935 ntBASIC17.01■□□□□ 0.31
SHOX2O60902 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHOX2O60902 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHOX2O60902 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHOX2O60902 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
SHOX2O60902 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHOX2O60902 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SHOX2O60902 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
SHOX2O60902 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.01■□□□□ 0.31
SHOX2O60902 AC106881.1-201ENST00000605849 3329 ntBASIC17.01■□□□□ 0.31
SHOX2O60902 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
SHOX2O60902 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
SHOX2O60902 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHOX2O60902 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHOX2O60902 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC17.01■□□□□ 0.31
SHOX2O60902 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHOX2O60902 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
SHOX2O60902 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
SHOX2O60902 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SHOX2O60902 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC17■□□□□ 0.31
SHOX2O60902 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms