Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LMX1BO60663 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LMX1BO60663 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LMX1BO60663 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LMX1BO60663 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
LMX1BO60663 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LMX1BO60663 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
LMX1BO60663 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC14.99□□□□□ -0.01
LMX1BO60663 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LMX1BO60663 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
LMX1BO60663 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC14.99□□□□□ -0.01
LMX1BO60663 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LMX1BO60663 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
LMX1BO60663 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LMX1BO60663 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC14.98□□□□□ -0.01
LMX1BO60663 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1BO60663 EGFEM1P-202ENST00000431685 1563 ntBASIC14.98□□□□□ -0.01
LMX1BO60663 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC14.98□□□□□ -0.01
LMX1BO60663 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1BO60663 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1BO60663 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1BO60663 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC14.98□□□□□ -0.01
LMX1BO60663 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1BO60663 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
LMX1BO60663 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1BO60663 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1BO60663 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1BO60663 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1BO60663 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1BO60663 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
LMX1BO60663 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1BO60663 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC14.98□□□□□ -0.01
LMX1BO60663 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1BO60663 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
LMX1BO60663 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1BO60663 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC14.98□□□□□ -0.01
LMX1BO60663 POLD2P1-201ENST00000511220 997 ntBASIC14.98□□□□□ -0.01
LMX1BO60663 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC14.98□□□□□ -0.01
LMX1BO60663 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC14.98□□□□□ -0.01
LMX1BO60663 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC14.98□□□□□ -0.01
LMX1BO60663 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC14.98□□□□□ -0.01
LMX1BO60663 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1BO60663 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC14.98□□□□□ -0.01
LMX1BO60663 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC14.98□□□□□ -0.01
LMX1BO60663 AC148477.8-201ENST00000624298 468 ntBASIC14.98□□□□□ -0.01
LMX1BO60663 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1BO60663 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC14.98□□□□□ -0.01
LMX1BO60663 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC14.98□□□□□ -0.01
LMX1BO60663 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC14.98□□□□□ -0.01
LMX1BO60663 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC14.98□□□□□ -0.01
LMX1BO60663 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC14.98□□□□□ -0.01
LMX1BO60663 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1BO60663 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1BO60663 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1BO60663 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC14.98□□□□□ -0.01
LMX1BO60663 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1BO60663 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
LMX1BO60663 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1BO60663 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC14.98□□□□□ -0.01
LMX1BO60663 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1BO60663 ZNF259P1-201ENST00000407656 1365 ntBASIC14.98□□□□□ -0.01
LMX1BO60663 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC14.98□□□□□ -0.01
LMX1BO60663 AL662844.4-201ENST00000606367 2838 ntBASIC14.98□□□□□ -0.01
LMX1BO60663 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1BO60663 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC14.97□□□□□ -0.01
LMX1BO60663 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1BO60663 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1BO60663 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
LMX1BO60663 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC14.97□□□□□ -0.01
LMX1BO60663 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1BO60663 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC14.97□□□□□ -0.01
LMX1BO60663 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1BO60663 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC14.97□□□□□ -0.01
LMX1BO60663 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1BO60663 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
LMX1BO60663 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1BO60663 AL603756.1-201ENST00000606511 2163 ntBASIC14.97□□□□□ -0.01
LMX1BO60663 AC132938.5-201ENST00000624980 1813 ntBASIC14.97□□□□□ -0.01
LMX1BO60663 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC14.97□□□□□ -0.01
LMX1BO60663 AL353593.2-201ENST00000602529 1483 ntBASIC14.97□□□□□ -0.01
LMX1BO60663 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1BO60663 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1BO60663 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1BO60663 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1BO60663 RPS2P28-201ENST00000314255 741 ntBASIC14.97□□□□□ -0.01
LMX1BO60663 MIR940-201ENST00000401276 94 ntBASIC14.97□□□□□ -0.01
LMX1BO60663 AC103564.2-201ENST00000432853 1299 ntBASIC14.97□□□□□ -0.01
LMX1BO60663 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC14.97□□□□□ -0.01
LMX1BO60663 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC14.97□□□□□ -0.01
LMX1BO60663 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC14.97□□□□□ -0.01
LMX1BO60663 AC139887.3-201ENST00000568585 713 ntBASIC14.97□□□□□ -0.01
LMX1BO60663 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC14.97□□□□□ -0.01
LMX1BO60663 PRKN-208ENST00000610470 531 ntTSL 2 BASIC14.97□□□□□ -0.01
LMX1BO60663 PRKN-209ENST00000612485 225 ntTSL 5 BASIC14.97□□□□□ -0.01
LMX1BO60663 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC14.97□□□□□ -0.01
LMX1BO60663 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC14.97□□□□□ -0.01
LMX1BO60663 CAND2-206ENST00000626378 333 ntTSL 5 BASIC14.97□□□□□ -0.01
LMX1BO60663 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1BO60663 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1BO60663 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms