Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 WT1-AS_2.1-201ENST00000613208 137 ntBASIC19.01■□□□□ 0.63
MSH4O15457 C20orf181-201ENST00000623918 480 ntBASIC19.01■□□□□ 0.63
MSH4O15457 AL645728.1-201ENST00000366221 2101 ntBASIC19.01■□□□□ 0.63
MSH4O15457 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC19.01■□□□□ 0.63
MSH4O15457 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC19.01■□□□□ 0.63
MSH4O15457 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
MSH4O15457 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSH4O15457 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSH4O15457 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
MSH4O15457 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
MSH4O15457 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
MSH4O15457 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
MSH4O15457 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC19.01■□□□□ 0.63
MSH4O15457 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
MSH4O15457 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC19■□□□□ 0.63
MSH4O15457 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC19■□□□□ 0.63
MSH4O15457 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
MSH4O15457 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
MSH4O15457 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC19■□□□□ 0.63
MSH4O15457 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC19■□□□□ 0.63
MSH4O15457 AC105020.1-201ENST00000435356 2205 ntBASIC19■□□□□ 0.63
MSH4O15457 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC19■□□□□ 0.63
MSH4O15457 AC022211.2-201ENST00000585075 2527 ntBASIC19■□□□□ 0.63
MSH4O15457 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC19■□□□□ 0.63
MSH4O15457 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
MSH4O15457 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC19■□□□□ 0.63
MSH4O15457 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
MSH4O15457 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC19■□□□□ 0.63
MSH4O15457 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC19■□□□□ 0.63
MSH4O15457 NMU-203ENST00000507338 658 ntTSL 3 BASIC19■□□□□ 0.63
MSH4O15457 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC19■□□□□ 0.63
MSH4O15457 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC19■□□□□ 0.63
MSH4O15457 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC19■□□□□ 0.63
MSH4O15457 AC087641.1-201ENST00000557561 1021 ntBASIC19■□□□□ 0.63
MSH4O15457 CYP2A7P1-201ENST00000595391 815 ntBASIC19■□□□□ 0.63
MSH4O15457 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
MSH4O15457 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC19■□□□□ 0.63
MSH4O15457 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
MSH4O15457 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
MSH4O15457 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC19■□□□□ 0.63
MSH4O15457 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC19■□□□□ 0.63
MSH4O15457 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC19■□□□□ 0.63
MSH4O15457 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
MSH4O15457 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
MSH4O15457 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC19■□□□□ 0.63
MSH4O15457 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
MSH4O15457 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
MSH4O15457 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
MSH4O15457 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
MSH4O15457 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
MSH4O15457 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
MSH4O15457 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC19■□□□□ 0.63
MSH4O15457 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC19■□□□□ 0.63
MSH4O15457 AC006277.1-201ENST00000624348 1610 ntBASIC19■□□□□ 0.63
MSH4O15457 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
MSH4O15457 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.99■□□□□ 0.63
MSH4O15457 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSH4O15457 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
MSH4O15457 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
MSH4O15457 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSH4O15457 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSH4O15457 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC18.99■□□□□ 0.63
MSH4O15457 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
MSH4O15457 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
MSH4O15457 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
MSH4O15457 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSH4O15457 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSH4O15457 AC140658.5-201ENST00000438532 169 ntBASIC18.99■□□□□ 0.63
MSH4O15457 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC18.99■□□□□ 0.63
MSH4O15457 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC18.99■□□□□ 0.63
MSH4O15457 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSH4O15457 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC18.99■□□□□ 0.63
MSH4O15457 AC013467.2-201ENST00000605472 835 ntBASIC18.99■□□□□ 0.63
MSH4O15457 AC091812.2-201ENST00000619081 385 ntBASIC18.99■□□□□ 0.63
MSH4O15457 AC055717.3-201ENST00000622967 595 ntBASIC18.99■□□□□ 0.63
MSH4O15457 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSH4O15457 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSH4O15457 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSH4O15457 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
MSH4O15457 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSH4O15457 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSH4O15457 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSH4O15457 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
MSH4O15457 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSH4O15457 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSH4O15457 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
MSH4O15457 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MSH4O15457 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
MSH4O15457 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
MSH4O15457 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
MSH4O15457 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSH4O15457 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSH4O15457 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSH4O15457 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSH4O15457 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSH4O15457 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
MSH4O15457 PC-204ENST00000524491 1714 ntTSL 2 BASIC18.98■□□□□ 0.63
MSH4O15457 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
MSH4O15457 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
MSH4O15457 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms