Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
HDAC3O15379 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
HDAC3O15379 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.58■□□□□ 0.25
HDAC3O15379 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC3O15379 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
HDAC3O15379 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC3O15379 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
HDAC3O15379 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
HDAC3O15379 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC3O15379 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC16.58■□□□□ 0.24
HDAC3O15379 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC16.58■□□□□ 0.24
HDAC3O15379 AC009533.2-201ENST00000543664 586 ntBASIC16.58■□□□□ 0.24
HDAC3O15379 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC3O15379 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.58■□□□□ 0.24
HDAC3O15379 AC090616.6-201ENST00000582640 721 ntBASIC16.58■□□□□ 0.24
HDAC3O15379 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.58■□□□□ 0.24
HDAC3O15379 AD001527.2-201ENST00000622994 785 ntBASIC16.58■□□□□ 0.24
HDAC3O15379 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC16.58■□□□□ 0.24
HDAC3O15379 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC3O15379 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
HDAC3O15379 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC3O15379 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC3O15379 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC3O15379 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC3O15379 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC3O15379 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC3O15379 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC3O15379 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC3O15379 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.58■□□□□ 0.24
HDAC3O15379 AC105917.1-201ENST00000506637 2539 ntBASIC16.58■□□□□ 0.24
HDAC3O15379 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC3O15379 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.58■□□□□ 0.24
HDAC3O15379 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC3O15379 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC3O15379 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HDAC3O15379 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC3O15379 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC3O15379 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC3O15379 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC3O15379 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC3O15379 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.57■□□□□ 0.24
HDAC3O15379 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC3O15379 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC3O15379 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC3O15379 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC3O15379 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC3O15379 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC3O15379 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC3O15379 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC3O15379 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC3O15379 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
HDAC3O15379 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC16.57■□□□□ 0.24
HDAC3O15379 TSPY22P-201ENST00000427496 604 ntBASIC16.57■□□□□ 0.24
HDAC3O15379 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.57■□□□□ 0.24
HDAC3O15379 DUX4L17-201ENST00000557360 1267 ntBASIC16.57■□□□□ 0.24
HDAC3O15379 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC3O15379 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.57■□□□□ 0.24
HDAC3O15379 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
HDAC3O15379 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC3O15379 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC3O15379 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC3O15379 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
HDAC3O15379 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC3O15379 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.57■□□□□ 0.24
HDAC3O15379 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.57■□□□□ 0.24
HDAC3O15379 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HDAC3O15379 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
HDAC3O15379 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC3O15379 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC3O15379 LINC00895-201ENST00000629028 1637 ntBASIC16.56■□□□□ 0.24
HDAC3O15379 AC006538.1-201ENST00000567905 1585 ntBASIC16.56■□□□□ 0.24
HDAC3O15379 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC3O15379 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC3O15379 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
HDAC3O15379 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC3O15379 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC3O15379 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
HDAC3O15379 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC3O15379 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC3O15379 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC3O15379 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC3O15379 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC3O15379 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC3O15379 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC3O15379 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
HDAC3O15379 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC3O15379 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
HDAC3O15379 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
HDAC3O15379 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.56■□□□□ 0.24
HDAC3O15379 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.56■□□□□ 0.24
HDAC3O15379 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.56■□□□□ 0.24
HDAC3O15379 DET1-205ENST00000558413 583 ntTSL 4 BASIC16.56■□□□□ 0.24
HDAC3O15379 AC083849.1-201ENST00000615227 514 ntBASIC16.56■□□□□ 0.24
HDAC3O15379 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
HDAC3O15379 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.56■□□□□ 0.24
HDAC3O15379 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
HDAC3O15379 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC3O15379 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HDAC3O15379 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
HDAC3O15379 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms