Protein–RNA interactions for Protein: F8WFD2

NPIPA3, Nuclear pore complex-interacting protein family member A3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA3F8WFD2 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 BCAR1-209ENST00000546196 1340 ntBASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 AL590787.1-201ENST00000568856 1315 ntBASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 NABP1-203ENST00000409510 843 ntTSL 5 BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 DNAJB3-202ENST00000449667 1266 ntBASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 ALG1L5P-201ENST00000482043 771 ntBASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 CIPC-205ENST00000555437 566 ntTSL 3 BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 AL596442.2-201ENST00000610240 980 ntBASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 AC010507.1-201ENST00000633895 436 ntBASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 EML3-212ENST00000494176 2901 ntTSL 2 BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 EML3-216ENST00000529309 2909 ntTSL 2 BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NPIPA3F8WFD2 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 AC139713.2-201ENST00000641328 2723 ntBASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 URGCP-206ENST00000446958 365 ntTSL 2 BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 AC096734.2-201ENST00000562054 433 ntBASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 OR7E47P-204ENST00000575924 449 ntBASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 MIR4469-201ENST00000583919 79 ntBASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 AL078644.1-201ENST00000609881 752 ntBASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
NPIPA3F8WFD2 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC15.48■□□□□ 0.07
NPIPA3F8WFD2 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
NPIPA3F8WFD2 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
NPIPA3F8WFD2 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC15.48■□□□□ 0.07
NPIPA3F8WFD2 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms