Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 AC132938.5-201ENST00000624980 1813 ntBASIC13.79□□□□□ -0.2
FOXA2Q9Y261 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 DUSP5P1-201ENST00000441325 1139 ntBASIC13.79□□□□□ -0.2
FOXA2Q9Y261 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 AL732292.2-201ENST00000609649 430 ntBASIC13.79□□□□□ -0.2
FOXA2Q9Y261 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 AL691432.3-201ENST00000621860 400 ntBASIC13.79□□□□□ -0.2
FOXA2Q9Y261 AD001527.2-201ENST00000622994 785 ntBASIC13.79□□□□□ -0.2
FOXA2Q9Y261 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 TUBB8P12-201ENST00000308911 1335 ntBASIC13.79□□□□□ -0.2
FOXA2Q9Y261 TUBB7P-202ENST00000428444 1305 ntBASIC13.79□□□□□ -0.2
FOXA2Q9Y261 TUBB8P7-204ENST00000567960 1332 ntBASIC13.79□□□□□ -0.2
FOXA2Q9Y261 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
FOXA2Q9Y261 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 DFFB-203ENST00000341385 572 ntTSL 5 BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 EMD-201ENST00000369835 966 ntTSL 3 BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 NKTR-203ENST00000442970 646 ntTSL 2 BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 ABCD1P5-201ENST00000445663 754 ntBASIC13.78□□□□□ -0.2
FOXA2Q9Y261 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
FOXA2Q9Y261 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms