Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC20.05■□□□□ 0.8
LIMCH1Q9UPQ0 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC20.05■□□□□ 0.8
LIMCH1Q9UPQ0 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC20.05■□□□□ 0.8
LIMCH1Q9UPQ0 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
LIMCH1Q9UPQ0 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LIMCH1Q9UPQ0 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC20.05■□□□□ 0.8
LIMCH1Q9UPQ0 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LIMCH1Q9UPQ0 ARMC10P1-201ENST00000313754 855 ntBASIC20.05■□□□□ 0.8
LIMCH1Q9UPQ0 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC20.05■□□□□ 0.8
LIMCH1Q9UPQ0 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMCH1Q9UPQ0 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LIMCH1Q9UPQ0 NABP1-203ENST00000409510 843 ntTSL 5 BASIC20.05■□□□□ 0.8
LIMCH1Q9UPQ0 BX005266.1-201ENST00000473402 457 ntBASIC20.05■□□□□ 0.8
LIMCH1Q9UPQ0 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LIMCH1Q9UPQ0 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC20.05■□□□□ 0.8
LIMCH1Q9UPQ0 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC20.05■□□□□ 0.8
LIMCH1Q9UPQ0 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMCH1Q9UPQ0 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMCH1Q9UPQ0 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LIMCH1Q9UPQ0 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LIMCH1Q9UPQ0 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC20.05■□□□□ 0.8
LIMCH1Q9UPQ0 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMCH1Q9UPQ0 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC20.05■□□□□ 0.8
LIMCH1Q9UPQ0 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMCH1Q9UPQ0 AC243591.1-201ENST00000452967 1364 ntBASIC20.05■□□□□ 0.8
LIMCH1Q9UPQ0 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMCH1Q9UPQ0 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC20.05■□□□□ 0.8
LIMCH1Q9UPQ0 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 AC064862.7-201ENST00000604520 867 ntBASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 AC093458.2-201ENST00000623150 629 ntBASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 PC-204ENST00000524491 1714 ntTSL 2 BASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMCH1Q9UPQ0 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
LIMCH1Q9UPQ0 AL662844.4-201ENST00000606367 2838 ntBASIC20.03■□□□□ 0.8
LIMCH1Q9UPQ0 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LIMCH1Q9UPQ0 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMCH1Q9UPQ0 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMCH1Q9UPQ0 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LIMCH1Q9UPQ0 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LIMCH1Q9UPQ0 KRT8P49-201ENST00000604166 1432 ntBASIC20.03■□□□□ 0.8
LIMCH1Q9UPQ0 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMCH1Q9UPQ0 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC20.03■□□□□ 0.8
LIMCH1Q9UPQ0 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMCH1Q9UPQ0 EMD-201ENST00000369835 966 ntTSL 3 BASIC20.03■□□□□ 0.8
LIMCH1Q9UPQ0 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC20.03■□□□□ 0.8
LIMCH1Q9UPQ0 TPM1-226ENST00000560959 925 ntTSL 2 BASIC20.03■□□□□ 0.8
LIMCH1Q9UPQ0 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC20.03■□□□□ 0.8
LIMCH1Q9UPQ0 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC20.03■□□□□ 0.8
LIMCH1Q9UPQ0 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC20.03■□□□□ 0.8
LIMCH1Q9UPQ0 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMCH1Q9UPQ0 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMCH1Q9UPQ0 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMCH1Q9UPQ0 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC20.03■□□□□ 0.8
LIMCH1Q9UPQ0 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMCH1Q9UPQ0 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMCH1Q9UPQ0 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
LIMCH1Q9UPQ0 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC20.03■□□□□ 0.8
LIMCH1Q9UPQ0 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LIMCH1Q9UPQ0 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIMCH1Q9UPQ0 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LIMCH1Q9UPQ0 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIMCH1Q9UPQ0 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIMCH1Q9UPQ0 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIMCH1Q9UPQ0 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
LIMCH1Q9UPQ0 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIMCH1Q9UPQ0 RNF146-204ENST00000476956 884 ntTSL 2 BASIC20.02■□□□□ 0.8
LIMCH1Q9UPQ0 FOSL1P1-201ENST00000511041 816 ntBASIC20.02■□□□□ 0.8
LIMCH1Q9UPQ0 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIMCH1Q9UPQ0 NKAPP1-205ENST00000585790 367 ntBASIC20.02■□□□□ 0.8
LIMCH1Q9UPQ0 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
LIMCH1Q9UPQ0 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC20.02■□□□□ 0.8
LIMCH1Q9UPQ0 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC20.02■□□□□ 0.8
LIMCH1Q9UPQ0 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC20.02■□□□□ 0.8
LIMCH1Q9UPQ0 AL022326.1-202ENST00000641533 845 ntBASIC20.02■□□□□ 0.8
LIMCH1Q9UPQ0 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIMCH1Q9UPQ0 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms