Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 WRB-204ENST00000398753 699 ntTSL 3 BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 FAM207CP-201ENST00000443486 507 ntBASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 AC140878.1-201ENST00000565277 250 ntBASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 CECR7-204ENST00000609932 568 ntTSL 2 BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 AL135999.2-201ENST00000622438 1686 ntBASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.74■□□□□ 0.43
LIMD1Q9UGP4 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 AP005018.1-201ENST00000525475 301 ntBASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 RARRES2P8-201ENST00000566335 367 ntBASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 COX11-202ENST00000571584 1108 ntTSL 2 BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 AL008721.1-201ENST00000609964 604 ntBASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIMD1Q9UGP4 AKAP8P1-201ENST00000434743 1349 ntBASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 AC093677.2-201ENST00000600169 1863 ntBASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 IGHV3-62-201ENST00000520057 340 ntBASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 RAB34-224ENST00000636513 888 ntTSL 5 BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 UXT-AS1-201ENST00000590504 1525 ntBASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC17.72■□□□□ 0.43
LIMD1Q9UGP4 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMD1Q9UGP4 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMD1Q9UGP4 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LIMD1Q9UGP4 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.71■□□□□ 0.43
LIMD1Q9UGP4 SPCS2P4-201ENST00000436160 681 ntBASIC17.71■□□□□ 0.43
LIMD1Q9UGP4 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms