Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC20.14■□□□□ 0.81
ZNF541Q9H0D2 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC20.14■□□□□ 0.81
ZNF541Q9H0D2 FAM220BP-201ENST00000377689 816 ntBASIC20.14■□□□□ 0.81
ZNF541Q9H0D2 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
ZNF541Q9H0D2 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
ZNF541Q9H0D2 AL512361.1-201ENST00000554200 418 ntBASIC20.14■□□□□ 0.81
ZNF541Q9H0D2 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC20.14■□□□□ 0.81
ZNF541Q9H0D2 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
ZNF541Q9H0D2 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC20.14■□□□□ 0.81
ZNF541Q9H0D2 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
ZNF541Q9H0D2 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
ZNF541Q9H0D2 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
ZNF541Q9H0D2 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
ZNF541Q9H0D2 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
ZNF541Q9H0D2 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF541Q9H0D2 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF541Q9H0D2 FAM86MP-201ENST00000340703 885 ntBASIC20.13■□□□□ 0.81
ZNF541Q9H0D2 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF541Q9H0D2 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC20.13■□□□□ 0.81
ZNF541Q9H0D2 OSM-203ENST00000403463 464 ntTSL 3 BASIC20.13■□□□□ 0.81
ZNF541Q9H0D2 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
ZNF541Q9H0D2 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC20.13■□□□□ 0.81
ZNF541Q9H0D2 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC20.13■□□□□ 0.81
ZNF541Q9H0D2 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF541Q9H0D2 CD81-207ENST00000481687 890 ntTSL 2 BASIC20.13■□□□□ 0.81
ZNF541Q9H0D2 PACS1-203ENST00000524815 628 ntTSL 4 BASIC20.13■□□□□ 0.81
ZNF541Q9H0D2 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF541Q9H0D2 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF541Q9H0D2 SNX29P1-201ENST00000548357 1007 ntBASIC20.13■□□□□ 0.81
ZNF541Q9H0D2 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC20.13■□□□□ 0.81
ZNF541Q9H0D2 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC20.13■□□□□ 0.81
ZNF541Q9H0D2 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF541Q9H0D2 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC20.13■□□□□ 0.81
ZNF541Q9H0D2 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC20.13■□□□□ 0.81
ZNF541Q9H0D2 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF541Q9H0D2 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC20.13■□□□□ 0.81
ZNF541Q9H0D2 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF541Q9H0D2 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC20.13■□□□□ 0.81
ZNF541Q9H0D2 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
ZNF541Q9H0D2 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
ZNF541Q9H0D2 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
ZNF541Q9H0D2 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ZNF541Q9H0D2 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ZNF541Q9H0D2 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
ZNF541Q9H0D2 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC20.12■□□□□ 0.81
ZNF541Q9H0D2 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
ZNF541Q9H0D2 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
ZNF541Q9H0D2 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC20.12■□□□□ 0.81
ZNF541Q9H0D2 SLC7A15P-201ENST00000424028 1363 ntBASIC20.12■□□□□ 0.81
ZNF541Q9H0D2 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC20.12■□□□□ 0.81
ZNF541Q9H0D2 SLC25A6P5-201ENST00000435663 894 ntBASIC20.12■□□□□ 0.81
ZNF541Q9H0D2 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC20.12■□□□□ 0.81
ZNF541Q9H0D2 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ZNF541Q9H0D2 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC20.12■□□□□ 0.81
ZNF541Q9H0D2 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC20.12■□□□□ 0.81
ZNF541Q9H0D2 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC20.12■□□□□ 0.81
ZNF541Q9H0D2 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
ZNF541Q9H0D2 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC20.12■□□□□ 0.81
ZNF541Q9H0D2 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC20.12■□□□□ 0.81
ZNF541Q9H0D2 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
ZNF541Q9H0D2 SPTSSB-204ENST00000617024 1292 ntBASIC20.12■□□□□ 0.81
ZNF541Q9H0D2 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
ZNF541Q9H0D2 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
ZNF541Q9H0D2 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC20.12■□□□□ 0.81
ZNF541Q9H0D2 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ZNF541Q9H0D2 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ZNF541Q9H0D2 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 FOS-208ENST00000555686 1496 ntTSL 2 BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 AC044860.1-202ENST00000559481 777 ntBASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 AC138028.4-201ENST00000564984 1845 ntBASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
ZNF541Q9H0D2 EGFEM1P-202ENST00000431685 1563 ntBASIC20.11■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms